AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Steve Greening
February 23, 2009 05:50PM
Hi,

Throughout the execution of the afni_proc.py script I am having the warning regarding oblique data.

Another reason I am wanting to run the deoblique function is because when I compare the EPI images to the anat images they do not align. In the past, I have used 3dWarp, which appears to correct the problem.

From what I can see, however, there is no way of running 3dWarp using the afni_proc. Is this correct?

What I have done as a possible solution is execute the afni python script without the 'regress' block. Then I used 3dWarp prior to 3dDeconvolve. Is this a valid solution?

Thanks,
Steve
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Subject Author Posted

3dWarp in Afni_proc.py

Steve Greening February 23, 2009 05:50PM

Re: 3dWarp in Afni_proc.py

rick reynolds February 23, 2009 06:17PM

Re: 3dWarp in Afni_proc.py

Steve Greening February 24, 2009 11:39AM