History of AFNI updates  

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April 05, 2009 08:47AM
Not directly; that is, there is no program for that purpose. You could approximate such a mask in several ways, but it would depend on how accurate you needed it and how much suffering/experimentation you were willing to undertake.

The most straightforward way might be to register the EPI to the TT_EPI+tlrc dataset with @auto_tlrc. Then use the Talairach atlas white matter mask, and back transform it to the +orig space (or operate entirely in +tlrc space). This would be crude, and not subject specific.

More elaborate methods could be devised, but I won't go on about them because my guess is that you want a pre-packaged solution, not a "try something like this and see what it looks like" suggestion.
Subject Author Posted

white matter mask from EPI

Andrea Spadoni April 04, 2009 03:32PM

Re: white matter mask from EPI

bob cox April 05, 2009 08:47AM

Re: white matter mask from EPI

Andrea Spadoni April 05, 2009 09:51AM

Re: white matter mask from EPI

bob cox April 05, 2009 04:08PM