Hi Stathis,

Daniel Glen is now the most familiar with Dicom files, and he is
not in this week.

Is that a new version of Siemen's software? It looks like the file
format does not match what our software currently expects. to3d
expects imx to be the number of images in a row times the number of
voxels across an image row. So it expects imx to be 128*7, not
just 128.

Would you be willing to upload that data? We should at least be
able to add an option to deal with it correctly, once we figure out
what Siemen's is doing in this case.

---

Regarding your 3dcalc problem, I think whenever AFNI gets a dataset
with an intent code that is not one of its short list of standard
intents, it will be thrown away.

I assume there was a warning message "** AFNI doesn't understand
NIFTI statistic type 1005...", is that right?

If you need to replace that intent code, nifti_tool is probably the
best way to go right now:

nifti_tool -mod_hdr -mod_field intent_code 1005 \
-prefix dti_new.nii -infiles dti.nii -overwrite

Sorry about that,

- rick