AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 11, 2009 05:02PM

Except that I get identical results with this command line:

align_epi_anat.py -giant_move -AddEdge -epi2anat -anat_has_skull no -anat refvol.lpcreg+orig -epi movvol.lpcreg+orig -epi_base 0

as I do when I add these options:

-Allineate_opts -warp shift_rotate

-Allineate_opts -warp shift_rotate_scale

All three commands generate "12 free parameters" in their terminal output, and the final registration matrix looks to be at least 9, and the 3dAllineate command in the terminal output does not have a -warp option, so I'm wondering if the warp option gets passed to 3dAllineate?

thanks

doug
Subject Author Posted

LPC Registration

Doug Greve May 07, 2009 06:06PM

Re: LPC Registration

Daniel Glen May 07, 2009 06:17PM

Re: LPC Registration

Doug Greve May 07, 2009 06:31PM

Re: LPC Registration

Daniel Glen May 07, 2009 06:54PM

Re: LPC Registration

Doug Greve May 08, 2009 04:28PM

Re: LPC Registration

Daniel Glen May 08, 2009 04:43PM

Re: LPC Registration

Doug Greve May 08, 2009 05:41PM

Re: LPC Registration

Daniel Glen May 08, 2009 05:51PM

Re: LPC Registration

Doug Greve May 08, 2009 06:25PM

Re: LPC Registration

Daniel Glen May 08, 2009 08:54PM

Re: LPC Registration

Doug Greve May 11, 2009 12:50PM

Re: LPC Registration

Daniel Glen May 11, 2009 01:30PM

Re: LPC Registration

Doug Greve May 11, 2009 05:02PM

Re: LPC Registration

Daniel Glen May 11, 2009 05:48PM

Re: LPC Registration

Doug Greve May 11, 2009 06:34PM

Re: LPC Registration

Daniel Glen May 12, 2009 11:52AM

Re: LPC Registration

Doug Greve May 12, 2009 02:19PM

Re: LPC Registration

Daniel Glen May 12, 2009 03:37PM

Re: LPC Registration

Doug Greve May 13, 2009 05:35PM

Re: LPC Registration

Daniel Glen May 13, 2009 05:57PM