AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 12, 2009 03:08PM
Most people like to have TR-locked regressors, since that is
the timing grid that they would get used to for the study.

However in your case there are 2 reasons why it may not be so
useful. One is that your TR is short (1.2 seconds), requiring
twice as any regressors as usual over the same time span. The
other is that it seems your stimuli are independent of the TR
timing. You can choose anything that makes sense.

I suggested 2.4 seconds so that the time grid will mean something
compared to the original one. But you could just as well have
one sample every 2 seconds, say.

Basically it doesn't matter much, except that people get used to
a certain time grid. So if the grid of the regressed signal has
nothing to do with the grid of the input EPI signal, it can be
confusing. Using 2.4 seconds might be a reasonable compromise.

Sticking with 1.2 seconds might be great if you could handle the
degrees of freedom. But with such a small jitter range, I suspect
you will have a lot of overlap in the regressors and get warnings
of multi-collinearity. It may be necessary to use fewer tents.

----

As a side note, timing_tool.py can be used to further evaluate the
ISIs across runs (averages, min, max, etc). See example 4 from
'timing_tool.py -help'.

- rick

Subject Author Posted

tent functions in 3dDeconvolve

Alessandra May 11, 2009 05:35PM

Re: tent functions in 3dDeconvolve

rick reynolds May 11, 2009 07:02PM

Re: tent functions in 3dDeconvolve

Alessandra May 12, 2009 02:42PM

Re: tent functions in 3dDeconvolve

rick reynolds May 12, 2009 03:08PM

Re: tent functions in 3dDeconvolve

Alessandra May 13, 2009 12:56PM

Re: tent functions in 3dDeconvolve

Alessandra May 13, 2009 05:08PM

Re: tent functions in 3dDeconvolve

rick reynolds May 14, 2009 09:27AM

Re: tent functions in 3dDeconvolve

Alessandra May 14, 2009 12:55PM

Re: tent functions in 3dDeconvolve

rick reynolds May 14, 2009 01:40PM

Re: tent functions in 3dDeconvolve

Alessandra May 14, 2009 02:48PM