AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Adam Greenberg
May 20, 2009 12:30PM
This is less an AFNI question and more a general issue I'm having running shell scripts on a MacBook Pro. I've got a simple script I'd like to run that looks like:

#!/bin/tcsh -f

####
# map functional data to surface for pretty pictures
####

3dVol2Surf \
-spec /Applications/X11Apps/AFNI_old/suma_tlrc/N27_both_tlrc.spec \
-surfA /Applications/X11Apps/AFNI_old/suma_tlrc/lh.smoothwm.tlrc.ply \
-surfB /Applications/X11Apps/AFNI_old/suma_tlrc/lh.pial.tlrc.ply \
-sv TT_N27+tlrc \
-grid_parent ANOVA3+tlrc[3] \
-cmask '-a ANOVA3+tlrc[2] -b ANOVA3+tlrc[3] -expr b*step(a)' \
-map_func ave \
-f_steps 10 \
-f_index voxels \
-outcols_NSDformat \
-out_niml ANOVA3_AVFDiff_LH.niml.dset

When I run it via command line in a terminal window opened via the X11 application, I get no error but nothing gets output either. I created the script using TextEdit (plain text) and made the file executable via chmod. Any help would be greatly appreciated.

Thanks,
Adam

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Subject Author Posted

Running scripts under Mac OS 10.4.11

Adam Greenberg May 20, 2009 12:30PM

Re: Running scripts under Mac OS 10.4.11

rick reynolds May 20, 2009 12:47PM

Re: Running scripts under Mac OS 10.4.11

Adam Greenberg May 20, 2009 01:01PM

Re: Running scripts under Mac OS 10.4.11

rick reynolds May 20, 2009 01:35PM