AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 24, 2017 11:41AM
Hi Rick,

I tried running 3dDeconvolve with 'jobs' set to 8 on my Mac Pro and Ubuntu 16.04 on my Desktop PC (8 cores). It was much faster on my Mac because "4 openMP" was used whereas only "1 openMP" was used in Ubuntu. What would be the reason?

I followed your instructions to install openMP for Ubuntu.
gcc version is 5.4.0
su -c 'yum install libgomp'
The command above didn't work. I got the error: "su: Authentication failure". So I tried sudo instead of su but it didn't work either. Looks like something was not right with the syntax. It saw this:
"usage: sudo -h | -K | -k | -V
usage: sudo ...
usage: sudo...
..."

Also, in your instructions:
"compile the AFNI binaries normally, but adding the following line
somewhere in your Makefile (such as after SHOWOFF):
OMPFLAG = -fopenmp -DUSE_OMP"

How can I locate my Afni Makefile?

I tried the command "make" and got this:
"make: *** No targets specified and no makefile found. Stop"

Thank you for your help,
Duong
Subject Author Posted

AFNI and OpenMP

bob cox June 09, 2009 07:57PM

Re: AFNI and OpenMP

bob cox June 29, 2009 01:57PM

Re: AFNI and OpenMP

rick reynolds July 06, 2009 04:42PM

Re: AFNI and OpenMP

dlhuynh August 24, 2017 11:41AM

Re: AFNI and OpenMP

rick reynolds August 24, 2017 12:53PM

Re: AFNI and OpenMP

bob cox July 17, 2010 02:31PM

Re: AFNI and OpenMP

rick reynolds July 23, 2010 11:06PM