Hello all,
After running @auto_tlrc on a batch of 14 participants, when I look at the skull-stripped anatomical that gets generated, I find that the script does a good job at removing the skull for everybody, but that a decent chunk of non-brain material, in particular most of one or both eyeballs, is retained for about half of my participants. I was unclear, after a search through the message boards, as to what the best practice is here. For example, as in the following thread:
[
afni.nimh.nih.gov]
This is the command that my script uses:
@auto_tlrc \
-base TT_N27+tlrc \
-input s${subj}_t1_mprage+orig
We're going to be doing a whole-brain analysis, so my instinct is that we're going to need an accurate description of the actual brain volume.
Thanks,
Chris
