AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Oori
July 13, 2009 11:20AM
A note that could save some one some time: Recent versions of FreeSurfer are still being distributed with a version of 3dvolreg from late 2006.

If you use freesurfer and its location is mentioned in the environment PATH before the AFNI tools directory, that will be the 3dvolreg you end up invoking. I ran into a problem when using the align_epi_anat.py, which seems to invoke 3dvolreg with the "-1Dmatrix_save" option. This option is not supported by the 3dvolreg distributed with FS.

Oori
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3dvolreg error due to misuse of old version (FreeSurfer's)

Oori July 13, 2009 11:20AM