AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 26, 2009 11:15AM
Hi Jim,

Doing a deconvolution when the curves overlap so much is often
problematic.

But modelling only 6 seconds of the response is sure to create
curves that are contaminated. In some cases those 6 seconds will
be only the start of a response, in most it will contain that later
part of the previous response, too. And the later half of the
final curve in a trial will end up contaminating the first curve
of the next trial (since they seem close together, too).

If you have many such trials for each event type, you should come
out with a reasonable result. Otherwise, I expect your result to
be noisy.

In any case, it is important to model the entire response that you
expect. Otherwise your curve means different things at different
times. If you expect the full response to last 14 seconds, that
should be your stim_maxlag. That the resonse curves overlap is
by design: since the stimuli are so close together, the responses
will indeed overlap.

A larger jitter range might be more helpful of course, since as
you seem to be TR-locked, there are only 5 possibilities for the
ISI. But maybe that isn't an option...

- rick

Subject Author Posted

Using -stim_maxlag with -iresp output across subsequent events

Jim Bjork August 25, 2009 04:25PM

Re: Using -stim_maxlag with -iresp output across subsequent events

rick reynolds August 26, 2009 11:15AM