AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mark pinsk
September 24, 2009 04:12PM
Hi, I'm trying to convert a bunch of ROI files that are in BRIK format into NIFTI format. Many of them convert without a problem, but some keep failing. See message below. They are all similar files, with just 0 or 1 values in them. 3dinfo on files that work and files that don't do not reveal any differences as far as I can see. Thanks! Mark

I'm running the latest afni_10.5_Intel_64 binaries. I've replicated the error on two machines (one running 10.5, the other running 10.6).

3dAFNItoNIFTI rh_perifV4+orig.

++ 3dAFNItoNIFTI: AFNI version=AFNI_2008_07_18_1710 (Sep 23 2009) [64-bit]

Fatal Signal 11 (SIGSEGV) received
THD_write_nifti
3dAFNItoNIFTI main
Bottom of Debug Stack
** AFNI version = AFNI_2008_07_18_1710 Compile date = Sep 23 2009
** [[Precompiled binary macosx_10.5_Intel_64: Sep 23 2009]]
** Program Abort **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
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Subject Author Posted

3dAFNItoNIFTI crashing

mark pinsk September 24, 2009 04:12PM

Re: 3dAFNItoNIFTI crashing

mark pinsk September 24, 2009 05:41PM

Re: 3dAFNItoNIFTI crashing

rick reynolds September 24, 2009 06:11PM

Re: 3dAFNItoNIFTI crashing

mark pinsk September 24, 2009 09:40PM

Re: 3dAFNItoNIFTI crashing

rick reynolds September 25, 2009 04:11PM

Re: 3dAFNItoNIFTI crashing

mark pinsk September 26, 2009 12:01AM

Re: 3dAFNItoNIFTI crashing

rick reynolds September 26, 2009 06:11PM