Several AFNI Matlab applications are now available as compiled applications that do not require Matlab. These include:
McRetroTS (a compiled version of RetroTS)
GroupAna (group analysis for 4 or 5 way ANOVA)
ExamineXmat (Design matrix graph displays)
Applications have been compiled explicitly for 64-bit Linux Intel, Mac Intel and Mac PPC platforms. Other platforms are not supported (though users are welcome to compile their own if they choose). These applications are described here along with some installation instructions:
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afni.nimh.nih.gov]
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afni.nimh.nih.gov]
McRetroTS has existed as a compiled application for several months now, but has had some recent updates to allow for more flexiblity on input options.
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afni.nimh.nih.gov]
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afni.nimh.nih.gov]