AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Stathis
October 02, 2009 12:59PM
Hello again!
I am trying to convert a single-slice dicom series into Nifti using to3d.
The orientation comes out as ASR, but the q-form
seems to suggest SRA:

pixdim1 0.9375000000
pixdim2 0.9375000000
pixdim3 5.0000000000

qto_xyz:1 0.040893 -0.000000 -4.995241 -0.000000
qto_xyz:2 -0.936608 -0.000000 -0.218097 154.462051
qto_xyz:3 0.000000 -0.937500 0.000000 94.237289
qto_xyz:4 0.000000 0.000000 0.000000 1.000000
qform_xorient Anterior-to-Posterior
qform_yorient Superior-to-Inferior
qform_zorient Right-to-Left

I have uploaded this dicom as SKanterakis.tar

Thank you again for your help.
Stathis
Reply Quote
RSS
Subject Author Posted

to3d wrong orient code on 2D series

Stathis October 02, 2009 12:59PM

Re: to3d wrong orient code on 2D series

rick reynolds October 02, 2009 01:17PM

Re: to3d wrong orient code on 2D series

Stathis October 05, 2009 01:00PM