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Daniel Glen
October 23, 2009 04:52PM
You can also use 3dLocalstat to make a kind of dilated blob. In this example, 3dLocalstat is used to look at a 2 voxel neighborhood in x and y for each voxel. A sum is computed at each voxel over its neighborhood, then any voxel with any neighbors at all in the neighborhood is given a value of 1 using 3dcalc.

3dLocalstat -nbhd 'RECT(-2,-2,0)' -stat 'sum' -prefix localstat_sum_am2 periphery_am2+orig

3dcalc -a localstat_sum_am2+orig. -expr 'step(a)' -prefix localstat_dilate2

The attached image shows the result of dilating a 1 voxel thick ROI with a 2 voxel neighborhood. This can be used in 3D and with spheres too.
Subject Author Posted

dilating a blob

Jed Meltzer October 22, 2009 05:26PM

Re: dilating a blob

rick reynolds October 22, 2009 05:59PM

Re: dilating a blob

Daniel Glen October 23, 2009 04:52PM