AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 05, 2009 11:20AM
The GammaVar model was developed for fitting a SINGLE gamma variate shaped component in the data -- that is, there is only one 'stimulus'. This thing was developed for modeling the response to an injected drug -- up and down (or down and up if the amplitude is negative!).

This model has 4 parameters, and as always in NL, you need to set the ranges over which program searches for these carefully or you will not get decent results. These parameters are

1) time delay of response from start of images == t0
2) amplitude factor == k
3) rise exponent == r
4) decay constant == b

The formula for the response model is

f(t) = 0 for t <= t0

f(t) = k * (t-t0)^r * exp(-(t-t0)/b) for t > t0

The reason I give the formulas, although I know many psychologists abhor such things, is that they are the only unambiguous way of being clear on what is being calculated.

You especially need to be careful when using this model to set the limits on t0 (parameter #1) reasonably.

If you are looking for a gamma variate DECONVOLUTION model, then you need one of the other functions.

Subject Author Posted

3dNLfit functions

Liz November 05, 2009 10:18AM

Re: 3dNLfit functions

bob cox November 05, 2009 11:20AM

Re: 3dNLfit functions

Liz November 09, 2009 09:28AM

Re: 3dNLfit functions

Daniel Glen November 09, 2009 11:17AM

Re: 3dNLfit functions

Liz November 10, 2009 11:17AM

Re: 3dNLfit functions

Liz November 13, 2009 12:03PM

Re: 3dNLfit functions

Daniel Glen November 13, 2009 01:21PM