AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 13, 2009 11:16AM
I hope you are feeling better Ziad.

This is the command and response I get. I feel somewhat embarrassed because format looks simple enough though I can't get it to work! My anatomical is float so I don't think NIFTI calc will apply. I have attached the HEAD file of anatomical.

Swallow/af1> @NoisySkullStrip -input anat1+orig
set: Syntax Error.

type = string-attribute
name = HISTORY_NOTE
count = 234
'[ababaei@linux-ves1: Wed Nov 4 09:36:14 2009] to3d -anat -session af1 -prefix anat1 'p250/e267/s1749/*'\n[ababaei@linux-ves1: Fri Nov 6 16:10:00 2009] 3drefit -dxorigin 44.414749 -dyorigin -18.097748 -dzorigin 3.511902 ./anat1+orig~

type = string-attribute
name = TYPESTRING
count = 15
'3DIM_HEAD_ANAT~

type = string-attribute
name = IDCODE_STRING
count = 27
'XYZ_2KTjB2pVozjsTBoGhCKWKA~

type = string-attribute
name = IDCODE_DATE
count = 25
'Wed Nov 4 09:36:14 2009~

type = integer-attribute
name = SCENE_DATA
count = 8
0 3 0 -999 -999
-999 -999 -999

type = string-attribute
name = LABEL_1
count = 11
'anat1+orig~

type = string-attribute
name = LABEL_2
count = 7
'Viggo!~

type = string-attribute
name = DATASET_NAME
count = 15
'af1/anat1+orig~

type = integer-attribute
name = ORIENT_SPECIFIC
count = 3
3 5 1

type = float-attribute
name = ORIGIN
count = 3
-104.5312 129.5312 74.5

type = float-attribute
name = DELTA
count = 3
0.9375 -0.9375 -1

type = float-attribute
name = IJK_TO_DICOM
count = 12
0 0 -1 70.9881 0.9375
0 0 -148.946 0 -0.9375
0 147.629

type = float-attribute
name = IJK_TO_DICOM_REAL
count = 12
0 0 -1 74.5 0.9375
0 0 -104.5312 0 -0.9375
0 129.5312

type = float-attribute
name = MARKS_XYZ
count = 30
-999999 -999999 -999999 -999999 -999999
-999999 -999999 -999999 -999999 -999999
-999999 -999999 -999999 -999999 -999999
-999999 -999999 -999999 -999999 -999999
-999999 -999999 -999999 -999999 -999999
-999999 -999999 -999999 -999999 -999999
Subject Author Posted

3dSkullStrip

Arash Babaei November 09, 2009 11:10AM

Re: 3dSkullStrip

bob cox November 09, 2009 04:20PM

Re: 3dSkullStrip

ziad November 10, 2009 10:21AM

Re: 3dSkullStrip

Arash Babaei November 13, 2009 11:16AM

Re: 3dSkullStrip

ziad November 13, 2009 01:31PM

Re: 3dSkullStrip

Arash Babaei November 13, 2009 01:48PM

Re: 3dSkullStrip

ziad November 19, 2009 09:41AM