AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Iain
November 24, 2009 12:22PM
Hi Jieun,

Not sure if this is best practice but, I do this:

to3d -fim -prefix ${subj}-${study}-${run} -session $sess -time:zt $n_slices $tp $tr @${slicetimes} -assume_dicom_mosaic -@ < dimon.files.func${run}

The bit of note for you is:

-time:zt $n_slices $tp $tr @${slicetimes}

Where "slicetimes" is a text file containing a single column of acquisition times, one for each slice.

cheers
iain

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Subject Author Posted

When TR and TA are different

Jieun Kim November 24, 2009 10:43AM

Re: When TR and TA are different

Daniel Glen November 24, 2009 12:17PM

Re: When TR and TA are different

Iain November 24, 2009 12:26PM

Re: When TR and TA are different

Iain November 24, 2009 12:22PM