AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 04, 2009 05:12PM
Maybe my understanding of how to use FDR correction is incorrect, but I ran a one-sample t-test using the tstat brick of each subject's 3ddeconvolve bucket dataset as my input. 3dttest said it created 1 FDR curves in header, but when I open the results in AFNI, I couldn't see the q values. So then I ran the command "3drefit -addFDR" on the output dataset, but there appears to be an error. Upon moving the threshold slider bar, my q values decrease to some value (i.e. 0.0879) and then don't get any smaller no matter how far up I move the slider bar (even if I set it to power-of-10 = 3 and put it at the every top). Are my commands wrong, or am I implementing the FDR correction incorrectly?

Thanks,
Michael
Subject Author Posted

FDR correction on 3dttest output

Michael December 04, 2009 05:12PM

Re: FDR correction on 3dttest output

Michael December 04, 2009 05:19PM

Re: FDR correction on 3dttest output

rick reynolds December 06, 2009 09:37PM

Re: FDR correction on 3dttest output

michael December 07, 2009 12:54PM

Re: FDR correction on 3dttest output

rick reynolds December 07, 2009 01:06PM

Re: FDR correction on 3dttest output

michael December 08, 2009 01:25PM

Re: FDR correction on 3dttest output

rick reynolds December 08, 2009 01:55PM

Re: FDR correction on 3dttest output

michael December 08, 2009 02:42PM