AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 20, 2010 11:02AM
Hi Rick,
Thanks for your reply. Yes, we have four runs and you are right about the regressors. Do you think for example, I should include motion regressors or not? I don't know if there is a standard way of doing "IM" analysis. I note that we have a fast event-related design where the stimuli are auditory and last 180ms or less. Also the ITI is for 8-16s with a TR=2s. There is overlap of the HDRs but there is at least 8 s between stimuli and we assume that the response is pretty much baseline by after 12s. Now the question becomes since I tried using 7 tps (6 TR) originally in "IM" but it can't solve the problem, I then decided on 3 coefficients instead. Do you think the 'IM" program gives reasonable results with TENT for 3 middle tps?
If not, what do you think I should do??? Is there any alternative? Do you have any guidelines to follow for which one would be pretty sure that "IM" works? This whole procedure seems uncertain. I would like an estimation of the peak response of individual trials, have any other suggestions?
I thank you very much for your help on this.
-Linda
Subject Author Posted

IM example

Linda January 19, 2010 12:15PM

Re: IM example

rick reynolds January 19, 2010 05:42PM

Re: IM example

Linda January 20, 2010 11:02AM

Re: IM example

rick reynolds January 20, 2010 02:28PM