AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 22, 2010 11:02AM
Hi Ziad,

My mistake: I thought I had the most recent version of your script, but I was using a version of @SUMA_Make_Spec_FS from Jan 14.

Now I have the most recent version dated Mar 19 and it has the 2009 stuff in there. The script runs, processes the 2009 files, and completes. I can see the colored labels on the surface model. Nice!

I get a few new notices about FSread_annot when I run the script, but I assume that is OK?

++ creating directory './SUMA' for results...
-- found 6 LH surfaces
-- found 6 RH surfaces
-- running 'mris_convert lh.smoothwm lh.smoothwm.asc'
-- running 'mris_convert lh.pial lh.pial.asc'
-- running 'mris_convert lh.inflated lh.inflated.asc'
-- running 'mris_convert lh.sphere lh.sphere.asc'
-- running 'mris_convert lh.white lh.white.asc'
-- running 'mris_convert lh.sphere.reg lh.sphere.reg.asc'
-- running 'mris_convert rh.smoothwm rh.smoothwm.asc'
-- running 'mris_convert rh.pial rh.pial.asc'
-- running 'mris_convert rh.inflated rh.inflated.asc'
-- running 'mris_convert rh.sphere rh.sphere.asc'
-- running 'mris_convert rh.white rh.white.asc'
-- running 'mris_convert rh.sphere.reg rh.sphere.reg.asc'
++ Notice FSread_annot (SUMA_FSread_annot.c:307):
Guessed FS annot version of 2009
++ Notice FSread_annot (SUMA_FSread_annot.c:319):
Guessed left hemisphere
++ Notice FSread_annot (SUMA_FSread_annot.c:341):
Using /Applications/freesurfer/FreeSurferColorLUT.txt
++ Notice FSread_annot (SUMA_FSread_annot.c:352):
Setting -FScmaprange to [13100 13199]
++ Notice FSread_annot (SUMA_FSread_annot.c:307):
Guessed FS annot version of 2009
++ Notice FSread_annot (SUMA_FSread_annot.c:321):
Guessed right hemisphere
++ Notice FSread_annot (SUMA_FSread_annot.c:341):
Using /Applications/freesurfer/FreeSurferColorLUT.txt
++ Notice FSread_annot (SUMA_FSread_annot.c:357):
Setting -FScmaprange to [14100 14199]
++ created spec file'./SUMA/TA327_surface_lh.spec'
++ created spec file'./SUMA/TA327_surface_rh.spec'
++ created spec file'./SUMA/TA327_surface_both.spec'

Subject Author Posted

Freesurfer a2009s labels

matt cieslak February 19, 2010 04:34PM

Re: Freesurfer a2009s labels

rick reynolds February 19, 2010 06:46PM

Re: Freesurfer a2009s labels

matt cieslak February 23, 2010 01:39PM

Re: Freesurfer a2009s labels

ziad February 23, 2010 07:52PM

Re: Freesurfer a2009s labels

matt cieslak February 26, 2010 02:49PM

Re: Freesurfer a2009s labels

ziad February 26, 2010 02:51PM

Re: Freesurfer a2009s labels

Tim Ellmore March 21, 2010 05:30PM

Re: Freesurfer a2009s labels

ziad March 22, 2010 10:07AM

Re: Freesurfer a2009s labels

Tim Ellmore March 22, 2010 11:02AM