Hi Ziad,
My mistake: I thought I had the most recent version of your script, but I was using a version of @SUMA_Make_Spec_FS from Jan 14.
Now I have the most recent version dated Mar 19 and it has the 2009 stuff in there. The script runs, processes the 2009 files, and completes. I can see the colored labels on the surface model. Nice!
I get a few new notices about FSread_annot when I run the script, but I assume that is OK?
++ creating directory './SUMA' for results...
-- found 6 LH surfaces
-- found 6 RH surfaces
-- running 'mris_convert lh.smoothwm lh.smoothwm.asc'
-- running 'mris_convert lh.pial lh.pial.asc'
-- running 'mris_convert lh.inflated lh.inflated.asc'
-- running 'mris_convert lh.sphere lh.sphere.asc'
-- running 'mris_convert lh.white lh.white.asc'
-- running 'mris_convert lh.sphere.reg lh.sphere.reg.asc'
-- running 'mris_convert rh.smoothwm rh.smoothwm.asc'
-- running 'mris_convert rh.pial rh.pial.asc'
-- running 'mris_convert rh.inflated rh.inflated.asc'
-- running 'mris_convert rh.sphere rh.sphere.asc'
-- running 'mris_convert rh.white rh.white.asc'
-- running 'mris_convert rh.sphere.reg rh.sphere.reg.asc'
++ Notice FSread_annot (SUMA_FSread_annot.c:307):
Guessed FS annot version of 2009
++ Notice FSread_annot (SUMA_FSread_annot.c:319):
Guessed left hemisphere
++ Notice FSread_annot (SUMA_FSread_annot.c:341):
Using /Applications/freesurfer/FreeSurferColorLUT.txt
++ Notice FSread_annot (SUMA_FSread_annot.c:352):
Setting -FScmaprange to [13100 13199]
++ Notice FSread_annot (SUMA_FSread_annot.c:307):
Guessed FS annot version of 2009
++ Notice FSread_annot (SUMA_FSread_annot.c:321):
Guessed right hemisphere
++ Notice FSread_annot (SUMA_FSread_annot.c:341):
Using /Applications/freesurfer/FreeSurferColorLUT.txt
++ Notice FSread_annot (SUMA_FSread_annot.c:357):
Setting -FScmaprange to [14100 14199]
++ created spec file'./SUMA/TA327_surface_lh.spec'
++ created spec file'./SUMA/TA327_surface_rh.spec'
++ created spec file'./SUMA/TA327_surface_both.spec'