AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
March 03, 2010 12:52PM
Bob's right; it's not easy to do 3D smoothing, but just in case you really want to do something, there are a couple ways to get something smoother on the screen.

If your dataset is to be displayed as an overlay dataset, you can change the warp-on-demand interpolation to be cubic instead of nearest neighbor (the default). The overlay and threshold interpolation to the underlay grid is controlled in the "Define Datamode" menu.

The slab projection methods in the Display menu of the image window allow mean and median over multiple slices, effectively smoothing the data. You can also use the "Tran 2D" options to choose a median filter within the 2D slice displayed in the viewer. You can even combine the slab projection and the Tran 2D to get a 3D smoothing of sorts. The sharpen option is the only filter that works directly in the image viewer at multiple levels, but it sharpens and doesn't blur. Each time the 's' key is pressed, the sharpening cycles among the 9 levels of sharpening.
Subject Author Posted

smoothing in viewer?

David Perlman March 02, 2010 07:09PM

Re: smoothing in viewer?

bob cox March 03, 2010 06:08AM

Re: smoothing in viewer?

bob cox March 03, 2010 09:33AM

Re: smoothing in viewer?

Daniel Glen March 03, 2010 12:52PM

Re: smoothing in viewer?

David Perlman March 03, 2010 04:33PM

Re: smoothing in viewer?

Judd March 03, 2010 04:53PM

Re: smoothing in viewer?

David Perlman March 04, 2010 11:09AM

Re: smoothing in viewer?

rick reynolds March 03, 2010 05:48PM

Re: smoothing in viewer?

Daniel Glen March 04, 2010 09:56AM