AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 05, 2010 02:00PM
Hi Laura, Phil, Colm,

These points should not make or break a person's paper.

It is good to keep the voxels size fairly close to the original size
when transforming to standard space. Going down to 1x1x1 is not
generally advised (when initial voxels were much larger). This is
probably what lead Doug to insist on getting cluster volumes in orig
space and applying them to group space. It is cheating to heavily
oversample the data (in terms of cluster requirements).

We suggest staying closer to the original size (afni_proc.py will
truncate the minimum dimension to 3 significant bits, by default,
though that is erring on the conservative side). Whether 2x2x2 is
reasonable depends on the original size. For 3x3x3, it does not
seem too bad. But for 4x4x4, it seems like too much.

Note that the blur estimates help smooth this over... :)

- rick

Subject Author Posted

Alphasim Clarification

Laura March 31, 2010 04:15PM

Re: Alphasim Clarification

Phil Burton March 31, 2010 06:14PM

Re: Alphasim Clarification

Colm Connolly March 31, 2010 06:53PM

Re: Alphasim Clarification

rick reynolds April 05, 2010 02:00PM