AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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nic
September 19, 2012 12:41PM
Hey Rick,

I'm having the same problem with 3dmema output. This is stored in short by default and it doesn't look like that there is an option to store in float (or default like 3dttest++), correct? None of the individual REML output (float) has these "holes" (which have a value of 0). I've been playing around with 3dcalc's -datum float on 3dmema output, masks, etc but I think the problem is that the data is short - so all the playing around doesn't do any good. I tried to add -float & -floatize to the 3dmema command but both are not recognized and there's no option in the 3dmema documentation. Is there another way to add the float option to 3dmema?

The data make sense in that they replicate 3dttest++ pretty closely and so I don't think I've done anything wrong in the script. At any rate, here it is:

3dMEMA -prefix mema_output -missing_data 0 -groups A B -set A xxxxx stats.subxxxxx_REML+tlrc.['stim#0_Coef'] stats.subxxxxx_REML+tlrc.['stim#0_Tstat'] .... -set adhd yyyyy stats.sub yyyyy _REML+tlrc.['stim#0_Coef'] stats.sub yyyyy _REML+tlrc.[''stim#0_Tstat'] ... -HKtest

Thanks a lot!

Nic
Subject Author Posted

3dfractionize and holes in masked stats map

Nicolette Schwarz April 01, 2012 03:29PM

Re: 3dfractionize and holes in masked stats map

rick reynolds April 01, 2012 06:39PM

Re: 3dfractionize and holes in masked stats map

nic September 19, 2012 12:41PM

Re: 3dfractionize and holes in masked stats map

gang September 20, 2012 09:58AM

Re: 3dfractionize and holes in masked stats map

rick reynolds September 20, 2012 10:20AM

Re: 3dfractionize and holes in masked stats map

nic September 20, 2012 12:01PM

Re: 3dfractionize and holes in masked stats map

nic September 20, 2012 12:05PM

Re: 3dfractionize and holes in masked stats map

Daniel Glen September 20, 2012 02:30PM

Re: 3dfractionize and holes in masked stats map

gang September 20, 2012 02:26PM

Re: 3dfractionize and holes in masked stats map

nic September 21, 2012 10:26AM

Re: 3dfractionize and holes in masked stats map

nicolette schwarz April 01, 2012 09:53PM