AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 15, 2012 04:49PM
I am not sure what "robust intensity range" means, but if you would like to scale each time series by its mean, then you can do this (extracted from afni_proc.py output):

# ================================= scale ==================================
# scale each voxel time series to have a mean of 100
# (be sure no negatives creep in)
# (subject to a range of [0,200])
foreach run ( $runs )
3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc
3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc \
-expr 'min(200, a/b*100)*step(a)*step(b)' \
-prefix pb04.$subj.r$run.scale
end

These steps are described in glorious detail in the tutorial here:

[afni.nimh.nih.gov]

See the t14_scale.txt page there for more info.
Subject Author Posted

Normalize signal Intensity

Carrie May 15, 2012 03:54PM

Re: Normalize signal Intensity

Daniel Glen May 15, 2012 04:49PM

Re: Normalize signal Intensity

Carrie May 15, 2012 05:40PM