AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 21, 2012 01:22PM
Hi Ziad,

I'm getting an error loading spec files with ROIgrow:

Error SUMA_BrainWrap_ParseInput:
Option -spec not understood.
Try -help for usage

The help function suggests -spec input should be fine. Here's my command:

ROIgrow -overwrite \
-spec $SUBJECTS_DIR/DE000/SUMA/std.141.DE000_${hemis}.spec \
-surf_A ${hemis}.smoothwm.asc \
-sv ${subj}_SurfVol_ns_Alnd_Exp+orig \
-roi_nodes roi-SUMA-${n}.closest.1D.dset"[0]" \
-lim $radius \
-full_list -prefix ROI-${n}.1D.dset

My suma -version is Mar 16 2012 and this -spec input works fine with other commands. Any thoughts?

cheers
Iain
Subject Author Posted

Surface equivalent for 3dUndump?

iain May 18, 2012 05:11PM

Re: Surface equivalent for 3dUndump?

nick May 21, 2012 07:19AM

Re: Surface equivalent for 3dUndump?

ziad May 21, 2012 09:36AM

Re: Surface equivalent for 3dUndump?

iain May 21, 2012 10:49AM

Re: Surface equivalent for 3dUndump?

iain May 21, 2012 01:22PM

Re: Surface equivalent for 3dUndump?

ziad May 21, 2012 05:18PM

Re: Surface equivalent for 3dUndump?

iain May 31, 2012 08:51PM

Re: Surface equivalent for 3dUndump?

ziad June 01, 2012 09:34AM