AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 28, 2012 05:35PM
Hi everybody,

I'm running 3dClustSim to get the minimal cluster size for some analyses. I'd like an athr of 0.0125 (0.05/4) but the report produced by 3dClustSim list 0.013 for the athr. I know in the grand scheme of things that 0.005 may not make a huge difference, but I'd still like to know whether 3dClustSim is rounding the 0.0125 to 0.013 in the output or rounding it to 0.013 before running the simulation. Can
anyone shed some light on this?

Thanks in advance,
Colm.
--
# 3dClustSim -mask ../../standard/MNI152_T1_3mm_brain.nii.gz -fwhm 4.2 -niml -prefix CStemp.alpha=0.0125.fwhm4.2 -athr 0.0125
# Grid: 61x73x61 3.00x3.00x3.00 mm^3 (67665 voxels in mask)
#
# CLUSTER SIZE THRESHOLD(pthr,alpha) in Voxels
# -NN 1 | alpha = Prob(Cluster >= given size)
# pthr | 0.013
# ------ | ------
0.100000 249.9
0.090000 196.6
0.080000 154.3
0.070000 120.0
0.060000 93.4
0.050000 74.1
0.040000 57.4
0.030000 43.8
0.020000 32.0
0.015000 26.1
0.010000 20.1
0.007000 16.8
0.005000 14.1
0.003000 11.4
0.002000 9.6
0.001500 8.7
0.001000 7.6
0.000700 6.7
0.000500 6.1
0.000300 5.2
0.000200 4.6
0.000150 4.3
0.000100 3.8
0.000070 3.5
0.000050 3.2
0.000030 2.8
0.000020 2.6
0.000015 2.4
0.000010 2.2
Subject Author Posted

3dClustSim rounding athr

Colm Connolly August 28, 2012 05:35PM

Re: 3dClustSim rounding athr

nick August 28, 2012 05:49PM