AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 06, 2012 09:23PM
Hi David,

You have to look for the text "orient" in the 3dinfo output. Since
running "3drefit -orient LPI" changed the perspective in the viewer,
the original orientation was not LPI. Using 3drefit to set to the proper
orientation is the right way to go (3dresample would shuffle the data
around, too, which is not what you want).

Note the danger in not being sure of the original orientation: which
side is left and which is right?

- rick
Subject Author Posted

convert Analyze to .nii: header orientation issue

David September 06, 2012 08:55PM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 06, 2012 09:23PM

Re: convert Analyze to .nii: header orientation issue

David September 15, 2012 02:02PM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 17, 2012 11:02AM

Re: convert Analyze to .nii: header orientation issue

David September 17, 2012 04:39PM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 19, 2012 09:38PM

Re: convert Analyze to .nii: header orientation issue

David September 20, 2012 04:17PM

Re: convert Analyze to .nii: header orientation issue

David September 22, 2012 12:02AM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 22, 2012 08:37PM

Re: convert Analyze to .nii: header orientation issue

David September 23, 2012 12:30PM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 23, 2012 08:34PM

Re: convert Analyze to .nii: header orientation issue

David September 24, 2012 03:30AM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 24, 2012 08:41AM

Re: convert Analyze to .nii: header orientation issue

David September 25, 2012 06:57PM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 25, 2012 09:04PM

Re: convert Analyze to .nii: header orientation issue

David September 26, 2012 02:02AM

Re: convert Analyze to .nii: header orientation issue

rick reynolds September 26, 2012 10:36AM