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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Hi Bob,
Thanks for the suggestions. I had the AFNI binaries updated and attempted to re-run the analysis. If I understand your last point regarding spaces correctly, I don't believe that is the case, but perhaps when you see the information below you might be able to let me know.
When attempting this in the updated version of AFNI, the main group results dataset is successfully wri
by
dsf
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AFNI Message Board
Hi Rick,
Thanks for the suggestions. I am pasting below the output from 3dttest++ beginning after the output .BRIK has already been written to the disk; I also tried the file_test command as per your last message on the script file and no problems were reported.
+ Added 12 FDR curves to dataset
++ Output dataset ./NewStream_VSseed_7_13_2016_clustsimtest_82subs_ControlsPIs_age_motion_ge
by
dsf
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AFNI Message Board
Here is a shortened version of the command I was running which has been giving me problems in employing the -Clustsim option in 3dttest++. I have many more subjects than I have listed here (45 in set A, 37 in set B), but have truncated the listing here for purposes of display/efficiency. Any thoughts would be more than welcome; let me know if something is unclear here.
Thanks again for your
by
dsf
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AFNI Message Board
So for me it appeared in part to be an AFNI version issue. I checked and realized we were running a few versions behind the current build. So now the -clustsim flag is recognized by AFNI when I run it. However, I am running into a different error now.
The output .BRIKs containing the results of the group analysis as well as the residual file are created successfully, but the program fails
by
dsf
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AFNI Message Board
Hi all,
Can someone clarify whether the -clustsim option within 3dttest++ is actually available for public use in afni & how specifically to implement it? I was under the impression it was, but when I attempt to use it, an error occurs saying that 3dttest++ does not recognize that option.
Thank you for your time.
by
dsf
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AFNI Message Board