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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi Daniel,
Thanks for your reply! I initially had it set up like this, with the levels reading
-dset a b c 'actualdata+tlrc' \
Like so:
3dANOVA3 -type 4 -alevels 2 -blevels 2 -clevels 8 \
\
-dset 1 1 1 'asd06.LOC.4runs.GLM+tlrc[4]' \
-dset 1 2 1 'asd06.LOC.4runs.GLM+tlrc[37]' \
-dset 1 1 2 'asd20.LOC.4runs.GLM+tlrc[4]' \
-dset
by
cynthiaspeng
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AFNI Message Board
Hello!
Just test running with a few subjects on 3dAnova3 before putting everyone in. I keep on getting this error:
++ 3dANOVA3: AFNI version=AFNI_2011_12_21_1014 (Sep 30 2013) [64-bit]
++ Authored by: B. Douglas Ward
++ WARNING: file /home/pengcs/.afni.log is now 329483952 (329 million ) bytes long!
** FATAL ERROR: Program 3dANOVA3: illegal argument after -dset
** Program compile date
by
cynthiaspeng
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AFNI Message Board
Hi everyone,
I am plotting ROI peaks on the surface using ".do" files. So far it's been working fine except that I can't get the colors to change to anything but cyan and lime green.
So far I've changed the 0.0 in the 4th column to 1.0 and 2.0 and so on, but to no avail... it seems like there is merely just lime green at 0.0 and cyan for anything other than 0.0. Can
by
cynthiaspeng
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AFNI Message Board
It worked pretty smoothly after your help; thanks again, Daniel!
by
cynthiaspeng
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AFNI Message Board
Hello!
I am experiencing some difficulty using adwarp. I am trying to take an ROI in the subject's orig space and transform it to the standard TT_N27.
I initially start out with an ROI in the subject's orig space
Then I run this command: adwarp -dxyz 3 -apar TT_N27+tlrc -dpar PeakROI_s{$subjnum}_LOC_ANIMAL-TOOL_{$roi}+orig
However, the transform puts the ROI much more anteri
by
cynthiaspeng
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AFNI Message Board
Hello!
I am currently using a script with 3dDeconvolve, which first defines the categories via -stim_times with onset timing files, and then subsequently defining the contrasts I want using -gltsym. However, I have discovered that there is an upper limit as to how many contrasts one can define; thus, I had to break my contrasts down and run 2 scripts in 2 separate parts.
I was wondering if
by
cynthiaspeng
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AFNI Message Board