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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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My out.ss_review text files show the blur estimates (FWHM) as all 0s for every subject. Here is an example below. Do you know if there is a problem?
Thank you!
subject ID : s2030
AFNI version : AFNI_19.2.04
AFNI package : linux_openmp_64
TR : 2.3
TRs removed (per run) : 2
num stim classes provided : 4
final anatomy ds
by
leahariana
-
AFNI Message Board
Hello!
Are the AFNI ACF blur estimates supposed to be using stats.s####_REML file as the final dataset? (and if not, do you know how to change @ss_review_basic to pull the stats file rather than the REML file?)
I've noticed a discrepancy between the ACF blur estimate values I recorded earlier and what I am getting now. (I double-checked that I am using the same version of AFNI.) I am w
by
leahariana
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AFNI Message Board
Thank you! Here you go:
lgrande2@du-hpc ~]$ ssh -X node37
Last login: Sun Jul 19 15:00:27 2020 from du-hpc
$ module load apps/afni-20.04
$ module load apps/R-3.6.1
$
$ module load tools/netpbm-10.73.32
$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release:
by
leahariana
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AFNI Message Board
Thank you so much for your help! I talked with IT to update the programs. I also used the commands you sent to help with the AFNI setup. I believe the programs should be good now, bu let me know if something looks wrong and I can talk with IT again.
I am getting a few different errors now with my script. Would you be able to take a look and let me know what might be the issue? I am including t
by
leahariana
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AFNI Message Board
Here is the output of which Xvfb:
lgrande2@node2 AFNI_scripts]$ which Xvfb
/usr/bin/which: no Xvfb in (/usr/local/netpbm/10.73.32/bin:/usr/local/R/3.3.3/bin:/usr/local/gdal/2.1.3/bin:/usr/local/proj/4.9.3/bin:/usr/local/curl/7.53.1/bin:/usr/local/geos/3.6.1/bin:/usr/local/openmpi/1.10.6/gnu/4.8.5-rhel/ib/bin:/usr/local/afni/19.2.04:/usr/local/R/3.6.1/bin:/usr/local/curl/7.64.1/bin:/usr/local/pr
by
leahariana
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AFNI Message Board
Hi AFNI gurus,
I am adapting another user's afni preprocessing script for my data and have run into some errors. Would you be able to take a look and let me know what might be wrong?
I listed some of the main errors is below. The IT department installed the Netpbm software for me, so I am unsure about why this issue is still coming up. I use: module load tools/netpbm-10.73.32
** ERR
by
leahariana
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AFNI Message Board