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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Hi experts,
I would like to transfer a .roi file from a surface to a .1D file with all node numbers in the list. I used ROI2DARASET function but only got the nodes numbers included in the ROI. Is there any way to realise this?
thanks for help.
Regards
by
Aaron_Chang
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AFNI Message Board
Hi pt,
Three is also a QC HTML in fmriprep,and below is the QC images for "aligment of functional and anatomical"
Aaron
by
Aaron_Chang
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AFNI Message Board
Hi-
Thanks for your reply ! This is the output:
0.000 sub-1_T1image
0.000 stats.sub-1
--Aaron
by
Aaron_Chang
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AFNI Message Board
Hi again!
Thank you soooo much for the detailed explanation! I set the above environment variable and the problem was solved successfully!
However, I found that epi image became slightly deviated from anat. Could you please tell me know how can I fix this?
Aaron
by
Aaron_Chang
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AFNI Message Board
Hi PT,
Thank you so much for your reply. Yes,the FMRIprep command above should be outputting the EPIs in alignment with the subject anatomical , basically in a "native" subject space).
And the A and B outputs are:
A:
N-1 header file 'sub-1_task-checker_acq-TR156_space-T1w_desc-brain_mask.nii.gz', num_fields = 2
name offset nvals values
--------
by
Aaron_Chang
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AFNI Message Board
I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep:
fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32
However, after preprocessing, I got anat in original format (sub1_T
by
Aaron_Chang
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AFNI Message Board
Hi, experts.
I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep:
fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32
However, after preprocessing, I got anat in original
by
Aaron_Chang
-
AFNI Message Board
Hi, experts.
I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep:
fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32
However, after preprocessing, I got anat in original
by
Aaron_Chang
-
AFNI Message Board
Hi, experts.
I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep:
fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32
However, after preprocessing, I got anat in original
by
Aaron_Chang
-
AFNI Message Board