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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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3dresample -master warsub-01_rest-MCI.nii -prefix MASK_resampl
ed -input MASK+tlrc
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./MASK+tlrc.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Obliqu
by
Fizza
-
AFNI Message Board
Greetings,
I am doing preprocessing using the script file and following all steps but after running for loop getting errors. Kindly help me to fix these fatal errors. Details are as follows:
for i in 'cat subjList.txt'; do
> tcsh proc_AD.sh $i;
> mv ${i}.results $i;
> done
auto-generated by afni_proc.py, Wed Sep 29 13:32:45 2021
(version 7.17, July 16, 2021)
execu
by
Fizza
-
AFNI Message Board
Hello Everyone,
I am getting these errors while doing preprocessing in AFNI, Can anyone help to fix these.
for i in 'cat subjList.txt'; do
> tcsh proc_emci.sh $i;
> mv ${i}.results $i;
> done
auto-generated by afni_proc.py, Wed Nov 24 16:26:38 2021
(version 7.17, July 16, 2021)
execution started: Thu Nov 25 10:41:58 PKT 2021
Precompiled binary linux_ubuntu_16_64: J
by
Fizza
-
AFNI Message Board
Dear Btaylor,
Thank you for your kind response. And I am not using Freesurfer with AFNI. Here are my processing script file details.
echo auto-generated by afni_proc.py, Tue Nov 23 16:41:35 2021
auto-generated by afni_proc.py, Tue Nov 23 16:41:35 2021
echo (version 7.17, July 16, 2021)
(version 7.17, July 16, 2021)
echo execution started: `date`
date
execution started: Tue Nov 23 16:42:0
by
Fizza
-
AFNI Message Board
Greetings,
I have errors in running my preprocessing script by using uber_subject.py. Details are as follows
for i in 'cat subjList.txt'; do
> tcsh proc_mci.sh $i;
> mv ${i}.results $i;
> done
auto-generated by afni_proc.py, Tue Nov 23 12:40:47 2021
(version 7.17, July 16, 2021)
execution started: Wed Nov 24 11:31:18 PKT 2021
Precompiled binary linux_ubuntu_16_64:
by
Fizza
-
AFNI Message Board
Greetings,
I have applied pre-processing steps " uber_subject.py" to my ADNI dataset but I got some strange output. Could anyone of you help me to troubleshoot this error?
Attached is my original data read in AFNI and the final results.
Looking forward to your prompt response.
Thank you
Regards,
Fizza
by
Fizza
-
AFNI Message Board
I need to combine these files in Afni for preprocessing, please guide me about command or procedure to do so .
Thank you
by
Fizza
-
AFNI Message Board