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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Thanks to Gang, I was able to fix the issue. The mask I was using in AFNI contained nonzero values so the mask was not recognized. I converted the original file to a recognizable mask with
3dcalc -a masked+tlrc. -expr 'step(a)' -prefix myMask
Thanks again Gang!
by
katekp
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AFNI Message Board
Hi Gang,
I updated AFNI yesterday when the issue first occured. I tried to update it again today per your suggestions and it says no update need. I am currently running Version AFNI_23.0.00 'Commodus'. I tried the 3dLME again just now and I got the same error.
by
katekp
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AFNI Message Board
Sorry for double posting--I meant to reply to this message.
Hello,
I was wondering if the issue from the original poster was solved? I am having the same error come up when I am using 3dLME.
We are trying to examine group by condition where group has two categories ("pos" and "neg") and cond has two categories ("threat" and "safe"). I updated R and a
by
katekp
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AFNI Message Board
Hi Rick,
Thank you very much. We used the tcsh -x and found where some data was not being extracted and realized it was due to a second tab in our code for two variables. Thanks for your help!
by
katekp
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AFNI Message Board
Also, the very end of the output displayed in the terminal says: "File: Subscript out of range."
by
katekp
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AFNI Message Board
Hello,
This is my first time posting a question so I apologize if my question is not clear.
I am running group analysis of 75 subjects for a task that has 6 conditions (6 sub-bricks for extraction). When I run our script to extract the data using 3dROIstats, only the first 50 subjects data are extracted as output. I tried re-running the script with just the remaining subjects, and only the n
by
katekp
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AFNI Message Board