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EDIT_options Struct Reference

#include <editvol.h>


Data Fields
int	thtoin
int	noneg
int	abss
float	clip_bot
float	clip_top
int	clip_unscaled
float	thresh
float	clust_rmm
float	clust_vmul
float	blur
float	thrblur
float	erode_pv
int	dilate
int	edit_clust
float	filter_rmm
int	filter_opt
float	thrfilter_rmm
int	thrfilter_opt
int	scale
float	mult
int	do_zvol
float	zv_x1
float	zv_x2
float	zv_y1
float	zv_y2
float	zv_z1
float	zv_z2
int	iv_fim
int	iv_thr
int	zscore
int	verbose
int	nfmask
byte *	fmask
char *	fexpr
int	fake_dxyz

Detailed Description

Data structure filled in EDIT_check_argv, and used to control EDIT_one_dataset (options applied in order given).

See also:: INIT_EDOPT()

Definition at line 195 of file editvol.h.

Field Documentation

int EDIT_options::abss

take absolute values of intensities

Definition at line 198 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

float EDIT_options::blur

Gaussian blur data with sigma = blur

Definition at line 207 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

float EDIT_options::clip_bot

zero out voxels with value in clip_bot..clip_top

Definition at line 200 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

float EDIT_options::clip_top

zero out voxels with value in clip_bot..clip_top

Definition at line 201 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::clip_unscaled

clip without scaling? [09 Aug 1996]

Definition at line 202 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

float EDIT_options::clust_rmm

cluster data with rmm radius

Definition at line 205 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), main(), remove_isolated_stuff(), and SUMA_BlankAfniEditOptions().

float EDIT_options::clust_vmul

remove clusters smaller than vmul

Definition at line 206 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), remove_isolated_stuff(), and SUMA_BlankAfniEditOptions().

int EDIT_options::dilate

dilation option (16 June 1998)

Definition at line 212 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::do_zvol

zero out a 3D sub-volume

Definition at line 227 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::edit_clust

edit cluster option (10 Sept 1996)

Definition at line 215 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), remove_isolated_stuff(), and SUMA_BlankAfniEditOptions().

float EDIT_options::erode_pv

erosion percentage (16 June 1998)

Definition at line 211 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::fake_dxyz

11 Sep 2000 -> use dx=dy=dz=1.0?

Definition at line 246 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), main(), and SUMA_BlankAfniEditOptions().

char* EDIT_options::fexpr

09 Aug 2000 --> filter expression

Definition at line 244 of file editvol.h.

Referenced by EDIT_one_dataset(), and MRG_read_opts().

int EDIT_options::filter_opt

filter option (11 Sept 1996)

Definition at line 218 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

float EDIT_options::filter_rmm

filter radius (11 Sept 1996)

Definition at line 217 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

byte* EDIT_options::fmask

Definition at line 243 of file editvol.h.

Referenced by EDIT_one_dataset(), main(), and MRG_read_opts().

int EDIT_options::iv_fim

use this sub-brick for voxel values

Definition at line 235 of file editvol.h.

Referenced by CL_read_opts(), EDIT_one_dataset(), main(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

int EDIT_options::iv_thr

use this sub-brick for threshold

Definition at line 236 of file editvol.h.

Referenced by CL_read_opts(), EDIT_one_dataset(), main(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

float EDIT_options::mult

multiply all voxels by this

Definition at line 225 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::nfmask

09 Aug 2000 --> filter mask

Definition at line 242 of file editvol.h.

Referenced by EDIT_check_argv(), main(), and MRG_read_opts().

int EDIT_options::noneg

throw away negative intensities

Definition at line 197 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::scale

linearly scale data so max = 10000

Definition at line 223 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

float EDIT_options::thrblur

Gaussian blur threshold data, with sigma = thrblur (4 Oct 1996)

Definition at line 208 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), main(), and SUMA_BlankAfniEditOptions().

float EDIT_options::thresh

zero out if threshold < thresh

Definition at line 204 of file editvol.h.

Referenced by CLUST_main(), EDIT_check_argv(), EDIT_one_dataset(), main(), and SUMA_BlankAfniEditOptions().

int EDIT_options::thrfilter_opt

threshold filter option (1 Oct 1996)

Definition at line 221 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), main(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

float EDIT_options::thrfilter_rmm

threshold filter radius (1 Oct 1996)

Definition at line 220 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), and SUMA_BlankAfniEditOptions().

int EDIT_options::thtoin

copy thresh data over intensity data

Definition at line 196 of file editvol.h.

Referenced by EDIT_check_argv(), EDIT_one_dataset(), main(), and SUMA_BlankAfniEditOptions().

int EDIT_options::verbose

01 Nov 1999 --> verbose output during editing

Definition at line 240 of file editvol.h.

Referenced by CL_read_opts(), EDIT_one_dataset(), MRG_read_opts(), and SUMA_BlankAfniEditOptions().

int EDIT_options::zscore

17 Sep 1998 --> convert statistic to Z

Definition at line 238 of file editvol.h.

Referenced by EDIT_check_argv(), and EDIT_one_dataset().

float EDIT_options::zv_x1