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THD_dataxes Struct Reference#include <3ddata.h>
Detailed Description
Struct to hold information about 3D brick grid in space. Voxel center x[i] is at xxorg + i * xxdel, et cetera.
Definition at line 1259 of file 3ddata.h.
Field Documentation
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Number of points in grid in x direction
Definition at line 1262 of file 3ddata.h.
Referenced by adwarp_follower_dataset(), AFNI_dataset_slice(), AFNI_follower_dataset(), AFNI_init_warp(), AFNI_initialize_view(), AFNI_jumpto_dicom(), AFNI_jumpto_ijk(), AFNI_lock_carryout(), AFNI_make_voxwarp(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_seq_send_CB(), AFNI_set_viewpoint(), AFNI_slice_flip(), AFNI_talto_CB(), apply_dataxes(), avg_epochs(), B2F_read_opts(), basis_write_iresp(), basis_write_sresp(), brainnormalize_coord(), BUCK_read_opts(), CALC_read_opts(), cubic_spline(), DELAY_main(), DRAW_ttatlas_CB(), DSET_cor(), dset_to_mri(), duplicate_dataset(), edgeDetect(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_main(), EDIT_one_dataset(), EXTRACT_main(), FD_brick_to_series(), fill_afni_struct(), get_dimensions(), get_xhair_points(), IMREG_main(), LMAP_XNAME(), LMAP_YNAME(), LMAP_ZNAME(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), PERMTEST_compute(), PLUTO_4D_to_nothing(), populate_nifti_image(), POWER_main(), PR_get_range(), process_as_floats(), process_data(), r_dxyz_mod_dataxes(), r_fill_resampled_data_brick(), r_idisp_thd_dataxes(), r_set_afni_s_from_dset(), REORDER_main(), RIC_CalcCoeffAB(), RIC_CalcVoxelMeans(), RIC_CorrectDataset(), ROIPLOT_main(), STAVG_main(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), T3D_swap_CB(), TCAT_read_opts(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_copy_dset_subs(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_extract_many_series(), THD_extract_series(), THD_write_minc(), THRESH_compute(), warp_corners(), write_3dtime(), write_bucket_data(), write_ts_array(), xhairs_to_image_pts(), and ZCAT_read_opts(). |
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Number of points in grid in y direction
Definition at line 1263 of file 3ddata.h.
Referenced by adwarp_follower_dataset(), AFNI_dataset_slice(), AFNI_follower_dataset(), AFNI_init_warp(), AFNI_initialize_view(), AFNI_jumpto_dicom(), AFNI_jumpto_ijk(), AFNI_lock_carryout(), AFNI_make_voxwarp(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_seq_send_CB(), AFNI_set_viewpoint(), AFNI_slice_flip(), AFNI_talto_CB(), apply_dataxes(), avg_epochs(), B2F_read_opts(), basis_write_iresp(), basis_write_sresp(), brainnormalize_coord(), BUCK_read_opts(), CALC_read_opts(), cubic_spline(), DELAY_main(), DRAW_ttatlas_CB(), DSET_cor(), dset_to_mri(), duplicate_dataset(), edgeDetect(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_main(), EDIT_one_dataset(), EXTRACT_main(), FD_brick_to_series(), fill_afni_struct(), get_dimensions(), get_xhair_points(), IMREG_main(), LMAP_XNAME(), LMAP_YNAME(), LMAP_ZNAME(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), PERMTEST_compute(), PLUTO_4D_to_nothing(), populate_nifti_image(), POWER_main(), PR_get_range(), process_as_floats(), process_data(), r_dxyz_mod_dataxes(), r_fill_resampled_data_brick(), r_idisp_thd_dataxes(), r_set_afni_s_from_dset(), REORDER_main(), RIC_CalcCoeffAB(), RIC_CalcVoxelMeans(), RIC_CorrectDataset(), ROIPLOT_main(), STAVG_main(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), T3D_swap_CB(), TCAT_read_opts(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_copy_dset_subs(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_extract_many_series(), THD_extract_series(), THD_write_minc(), THRESH_compute(), warp_corners(), write_3dtime(), write_bucket_data(), write_ts_array(), xhairs_to_image_pts(), and ZCAT_read_opts(). |
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Number of points in grid in z direction
Definition at line 1264 of file 3ddata.h.
Referenced by adwarp_follower_dataset(), AFNI_dataset_slice(), AFNI_follower_dataset(), AFNI_init_warp(), AFNI_initialize_view(), AFNI_jumpto_dicom(), AFNI_jumpto_ijk(), AFNI_lock_carryout(), AFNI_make_voxwarp(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_seq_send_CB(), AFNI_set_viewpoint(), AFNI_slice_flip(), AFNI_talto_CB(), apply_dataxes(), avg_epochs(), B2F_read_opts(), basis_write_iresp(), basis_write_sresp(), brainnormalize_coord(), BUCK_read_opts(), CALC_read_opts(), cubic_spline(), DELAY_main(), DRAW_ttatlas_CB(), DSET_cor(), dset_to_mri(), duplicate_dataset(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_main(), EDIT_one_dataset(), EXTRACT_main(), fill_afni_struct(), get_dimensions(), get_xhair_points(), IMREG_main(), LMAP_XNAME(), LMAP_YNAME(), LMAP_ZNAME(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), PERMTEST_compute(), PLUTO_4D_to_nothing(), populate_nifti_image(), POWER_main(), PR_get_range(), process_as_floats(), process_data(), r_dxyz_mod_dataxes(), r_fill_resampled_data_brick(), r_idisp_thd_dataxes(), r_set_afni_s_from_dset(), REORDER_main(), RIC_CalcCoeffAB(), RIC_CalcVoxelMeans(), RIC_CorrectDataset(), ROIPLOT_main(), STAVG_main(), T3D_fix_dataset_dimen(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), T3D_swap_CB(), TCAT_read_opts(), terminate_program(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_copy_dset_subs(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_write_minc(), THRESH_compute(), warp_corners(), write_3dtime(), write_bucket_data(), write_ts_array(), and xhairs_to_image_pts(). |
XtPointer THD_dataxes::parent
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type code: DATAXES_TYPE
Definition at line 1260 of file 3ddata.h.
Referenced by AFNI_do_many_writes(), AFNI_init_warp(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_write_dataset_CB(), EDIT_empty_copy(), main(), r_idisp_thd_dataxes(), r_new_resam_dset(), T3D_read_images(), and THD_3dim_from_block(). |
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Spacings between voxel centers (mm) - may be negative
Definition at line 1269 of file 3ddata.h.
Referenced by AFNI_dataset_slice(), AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), CREN_dset_axes(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_one_dataset(), EDT_calcmask(), get_dimensions(), get_xhair_points(), IMREG_main(), main(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), RCREND_reload_func_dset(), REND_cutout_blobs(), REND_reload_func_dset(), ROIPLOT_main(), SUMA_FormAfnidset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_open_view_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_init_session(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), and xhairs_to_image_pts(). |
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Bounding box for grid
Definition at line 1274 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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Bounding box for grid
Definition at line 1273 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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Center of (0,0,0) voxel
Definition at line 1266 of file 3ddata.h.
Referenced by AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDT_calcmask(), get_xhair_points(), main(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), REND_cutout_blobs(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_edit_dataxes(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), VL_command_line(), and xhairs_to_image_pts(). |
int THD_dataxes::xxorient
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Orientation code
Definition at line 1280 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), AFNI_overlay(), AFNI_read_images(), brainnormalize_coord(), CREN_dset_axes(), DBLE_mat_to_dicomm(), display_coords(), DRAW_fillin_CB(), EDIT_dset_items(), EDIT_empty_copy(), main(), populate_nifti_image(), r_idisp_thd_dataxes(), RT_registration_3D_onevol(), segment_volume(), SNGL_mat_to_dicomm(), SUMA_ConvexHullSurface(), SUMA_FormAfnidset(), SUMA_MarchingCubesSurface(), SUMA_THD_handedness(), SUMA_VolDims(), SUMA_VolParFromDset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dim_from_block(), THD_3dmm_to_dicomm(), THD_axcode(), THD_dataset_info(), THD_dataset_mismatch(), THD_dicomm_to_3dmm(), THD_get_axis_direction(), THD_handedness(), THD_init_session(), THD_oriented_brick(), THD_set_dataset_attributes(), THD_setup_bricks(), THD_write_1D(), THD_write_minc(), THD_zeropad(), valid_resam_inputs(), VL_command_line(), and VOLREG_main(). |
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Spacings between voxel centers (mm) - may be negative
Definition at line 1270 of file 3ddata.h.
Referenced by AFNI_dataset_slice(), AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), CREN_dset_axes(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_one_dataset(), EDT_calcmask(), get_dimensions(), get_xhair_points(), IMREG_main(), main(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), RCREND_reload_func_dset(), REND_cutout_blobs(), REND_reload_func_dset(), ROIPLOT_main(), SUMA_FormAfnidset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_open_view_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_init_session(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), and xhairs_to_image_pts(). |
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Bounding box for grid
Definition at line 1276 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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Bounding box for grid
Definition at line 1275 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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Center of (0,0,0) voxel
Definition at line 1267 of file 3ddata.h.
Referenced by AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDT_calcmask(), get_xhair_points(), main(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), REND_cutout_blobs(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_edit_dataxes(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), VL_command_line(), and xhairs_to_image_pts(). |
int THD_dataxes::yyorient
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Orientation code
Definition at line 1281 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), AFNI_overlay(), AFNI_read_images(), brainnormalize_coord(), CREN_dset_axes(), DBLE_mat_to_dicomm(), display_coords(), DRAW_fillin_CB(), EDIT_dset_items(), EDIT_empty_copy(), main(), populate_nifti_image(), r_idisp_thd_dataxes(), RT_registration_3D_onevol(), segment_volume(), SNGL_mat_to_dicomm(), SUMA_ConvexHullSurface(), SUMA_FormAfnidset(), SUMA_MarchingCubesSurface(), SUMA_THD_handedness(), SUMA_VolDims(), SUMA_VolParFromDset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dim_from_block(), THD_3dmm_to_dicomm(), THD_axcode(), THD_dataset_info(), THD_dataset_mismatch(), THD_dicomm_to_3dmm(), THD_get_axis_direction(), THD_handedness(), THD_init_session(), THD_oriented_brick(), THD_set_dataset_attributes(), THD_setup_bricks(), THD_write_1D(), THD_write_minc(), THD_zeropad(), valid_resam_inputs(), VL_command_line(), and VOLREG_main(). |
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Spacings between voxel centers (mm) - may be negative
Definition at line 1271 of file 3ddata.h.
Referenced by AFNI_dataset_slice(), AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), CREN_dset_axes(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDIT_one_dataset(), EDT_calcmask(), FD_brick_to_series(), get_dimensions(), get_xhair_points(), IMREG_main(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), PLUTO_4D_to_nothing(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), RCREND_reload_func_dset(), REND_cutout_blobs(), REND_reload_func_dset(), ROIPLOT_main(), SUMA_FormAfnidset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_open_view_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_dataset_mismatch(), THD_edit_dataxes(), THD_extract_many_series(), THD_extract_series(), THD_init_session(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), and xhairs_to_image_pts(). |
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Bounding box for grid
Definition at line 1278 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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Bounding box for grid
Definition at line 1277 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), EDIT_dset_items(), EDIT_empty_copy(), main(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), SUMA_FormAfnidset(), THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_edit_dataxes(). |
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center of (0,0,0) voxel
Definition at line 1268 of file 3ddata.h.
Referenced by AFNI_init_warp(), AFNI_make_voxmap(), AFNI_read_images(), apply_dataxes(), apply_orientation(), brainnormalize_coord(), DRAW_ttatlas_CB(), EDIT_dset_items(), EDIT_empty_copy(), EDT_calcmask(), FD_brick_to_series(), get_xhair_points(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), PLUTO_4D_to_nothing(), populate_nifti_image(), PR_get_range(), r_dxyz_mod_dataxes(), r_idisp_thd_dataxes(), RCREND_cutout_blobs(), REND_cutout_blobs(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dim_from_block(), THD_3dind_to_3dmm(), THD_3dind_to_3dmm_no_wod(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_3dmm_to_3dind_no_wod(), THD_dataset_center(), THD_dataset_info(), THD_edit_dataxes(), THD_extract_many_series(), THD_extract_series(), THD_set_dataset_attributes(), THD_warp3D(), THD_write_minc(), THD_zeropad(), VL_command_line(), and xhairs_to_image_pts(). |
int THD_dataxes::zzorient
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Orientation code
Definition at line 1282 of file 3ddata.h.
Referenced by AFNI_brick_to_mri(), AFNI_init_warp(), AFNI_overlay(), AFNI_read_images(), AFNI_refashion_dataset(), brainnormalize_coord(), CREN_dset_axes(), DBLE_mat_to_dicomm(), display_coords(), DRAW_fillin_CB(), EDIT_dset_items(), EDIT_empty_copy(), main(), populate_nifti_image(), r_idisp_thd_dataxes(), RT_registration_3D_onevol(), segment_volume(), SNGL_mat_to_dicomm(), SUMA_ConvexHullSurface(), SUMA_FormAfnidset(), SUMA_MarchingCubesSurface(), SUMA_THD_handedness(), SUMA_VolDims(), SUMA_VolParFromDset(), sync_master_opts(), T3D_geometry_parent_CB(), T3D_read_images(), T3D_save_file_CB(), THD_3dim_from_block(), THD_3dmm_to_dicomm(), THD_axcode(), THD_dataset_info(), THD_dataset_mismatch(), THD_dicomm_to_3dmm(), THD_get_axis_direction(), THD_handedness(), THD_init_session(), THD_oriented_brick(), THD_set_dataset_attributes(), THD_setup_bricks(), THD_write_1D(), THD_write_minc(), THD_zeropad(), valid_resam_inputs(), VL_command_line(), and VOLREG_main(). |
The documentation for this struct was generated from the following file:
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