Hi Ziad,
thanks for clarifying and explaining the outputs from 3dSeg.
I compared the results from it with those that I derived using FSL segmentation and found that 3dSeg does a better or comparable job. So I am going to use it if I need CSF and WM to be regressed out.
I would also like your help in understanding those .1D files in case I need to regress out CSF and WM using 3ddeconvolve. There are 7 .1D files namely,
SUMA_SegInitCset_K023_Ge.dis.1D
SUMA_SegInitCset_K023_Ge.kgg.1D
SUMA_SegInitCset_K03_Ge.cen.1D
SUMA_SegInitCset_K03_Ge.info1.1D
SUMA_SegInitCset_K3_Gx.info2.1D
SUMA_SegInitCset_K3_Gx.vcd.1D
SUMA_SegInitCset_K3.pal
Please explain them in short. I would really appreciate it.
Sincerely,
Shant