AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 24, 2012 05:11PM
Hi, I'm using playing w/ 3dSeg also, but after I type in:
3dSeg -anat T1.nii -mask T1_mask+orig -classes 'CSF ; GM ; WM' -bias_classes 'GM ; WM' -bias_fwhm 25
I got:
++ Sub-brick 0 in T1_mask.nii not of type short.
Creating new short copy of dset
** ERROR: EDIT_substscale_brick: non-float and non-double input! (0 1 1)
** ERROR: No voxels in the mask!

Fatal Signal 11 (SIGSEGV) received
SUMA_SegInitCset
3dSeg
Bottom of Debug Stack
** AFNI version = AFNI_2011_05_26_1457 Compile date = Aug 19 2011
** [[Precompiled binary linux_gcc33_64: Aug 19 2011]]

there is not any detail description about error and option in help manual, please help me with the error, thanks!
Subject Author Posted

usage of 3dSeg

Victor Xu October 24, 2012 01:09PM

Re: usage of 3dSeg

Peter Molfese October 24, 2012 02:22PM

Re: usage of 3dSeg

Shant October 29, 2012 03:35PM

Re: usage of 3dSeg

ziad October 29, 2012 04:21PM

Re: usage of 3dSeg

Shant October 30, 2012 03:48PM

Re: usage of 3dSeg

Shant November 05, 2012 09:56AM

Re: usage of 3dSeg

ziad November 06, 2012 06:05PM

Re: usage of 3dSeg

Shant November 08, 2012 11:12AM

Re: usage of 3dSeg

ziad November 08, 2012 04:09PM

Re: usage of 3dSeg

Shant November 14, 2012 05:23PM

Re: usage of 3dSeg

ziad November 06, 2012 06:04PM

Re: usage of 3dSeg

Shant November 08, 2012 11:14AM

Re: usage of 3dSeg

zhan November 24, 2012 05:11PM

Re: usage of 3dSeg

rick reynolds November 25, 2012 10:48AM

Re: usage of 3dSeg

zhan November 25, 2012 12:52PM

Re: usage of 3dSeg

rick reynolds November 25, 2012 07:26PM