I am seeing this very strange behavior from afni_proc.py program. Now in the proc.subjname file, instead of just a "+orig", I see this very long freesurfer environmental settings output appended to "+orig" extension. When I run the afni_proc.py from command line, I get the following message :
-- applying orig view as -------- freesurfer-Linux-centos4_x86_64-stable-pub-v4.4.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/imports/freesurfer_x86_64_v4.4.0
FSFAST_HOME /usr/local/imports/freesurfer_x86_64_v4.4.0/fsfast
FSF_OUTPUT_FORMAT nii
MNI_DIR /usr/local/imports/freesurfer_x86_64_v4.4.0/mni
FSL_DIR /usr/local/imports/fsl
+orig
Any help ???
regards,
krishna