AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
November 27, 2012 09:51PM
Hi Krishna and David,

I don't know what FreeSurfer env var might be doing this,
so it is hard to reply to unless I see it. However in the few
cases that I have used FreeSurfer in the past, I would put
those initialization variable in a script and ONLY set them
when I was about to use FreeSurfer.

They set a bunch of variables and manipulate the PATH
(which seems evil to me).

I would not run AFNI under a FreeSurfer environment.

On the flip side, I would consider looking into this to see
exactly what is going on. Is it enough to just run their
init script and then use afni_proc.py?

- rick
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Subject Author Posted

strange afni_proc.py behavior

Anonymous User November 27, 2012 02:32PM

Re: strange afni_proc.py behavior

David Molfese November 27, 2012 03:40PM

Re: strange afni_proc.py behavior

rick reynolds November 27, 2012 09:51PM

Re: strange afni_proc.py behavior

David Molfese November 28, 2012 02:02PM

Re: strange afni_proc.py behavior

rick reynolds November 28, 2012 09:25PM

Re: strange afni_proc.py behavior

Peter Molfese November 28, 2012 09:45PM

Re: strange afni_proc.py behavior

rick reynolds November 28, 2012 09:59PM