AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Isa
March 21, 2013 02:07PM
Dear AFNI experts,

As previously suggested, I decided to use AFNI_proc.py to preprocess my data. So far, things are working great. However, things would be even better if I could somehow tell the script to use for prefix, the original file name instead of the R01, R02, R03, R04 that it is using for the 4 EPIs.

For example, these are the file names for one subject:

S002.ColorRun1.3+orig.BRIK
S002.ColorRun1.3+orig.HEAD
S002.ColorRun2.4+orig.BRIK
S002.ColorRun2.4+orig.HEAD
S002.anatomical.5+orig.BRIK
S002.anatomical.5+orig.HEAD
S002.LingRun1.6+orig.BRIK
S002.LingRun1.6+orig.HEAD
S002.LingRun2.3+orig.BRIK
S002.LingRun2.3+orig.HEAD


I would like to be able to keep the ColorRun1, ColorRun2,LingRun1 and LingRun2 in the file names of the output. The number after the name (e.g. 3 after ColorRun1), is not that important, so if it can’t stay, it is not a problem. Is this possible?



Thank you,

Isa
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Subject Author Posted

AFNI_proc.py file names

Isa March 21, 2013 02:07PM

Re: AFNI_proc.py file names

rick reynolds March 21, 2013 03:10PM

Re: AFNI_proc.py file names

Isa March 22, 2013 07:54AM

Re: AFNI_proc.py file names

rick reynolds March 22, 2013 11:28AM