AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Isa
March 22, 2013 07:54AM
Hi Rick,

I was going to use AFNI_proc.py for preprocessing and run my own pair of 3dDeconvolve after. I want to keep the names because for some subjects, the LingRun (1 and 2) were done before the anatomical scan and for others after (the same is true for the ColorRun). I might also used AFNI_proc.py for the 3dDeconvole, but I am not sure how the script renames my runs, based on their original name. Also, I would like to use the same timing file for all subjects.

In 3dDeconvolve, I usually use the same timing file for everyone, but I change the order of the input files to match the timing file. So for example, if the timing file has the time for LingRun1, LingRun2, ColorRun1, and ColorRun2, the command line for 3dDeconvolve will include for all subjects this order, regardless of whether LingRun1 was acquired before or after the anatomical. I hope this makes sense.

Thank you for your help,

Isabelle
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Subject Author Posted

AFNI_proc.py file names

Isa March 21, 2013 02:07PM

Re: AFNI_proc.py file names

rick reynolds March 21, 2013 03:10PM

Re: AFNI_proc.py file names

Isa March 22, 2013 07:54AM

Re: AFNI_proc.py file names

rick reynolds March 22, 2013 11:28AM