AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 18, 2013 07:31PM
> How can I threshold the F subricks without the T-statistic (like we usually get in 3dANOVA)?

Do you mean that you want to know the directionality of the covariate effect? If so, 3dLME should automatically output the effect plus the associated t-statistic.

> I have a few other covariates that are similar to age and in one case the groups
> definitely do differ. Would that be a problem?

If a covariate differs across groups in terms of its average value, that should be dealt with extraordinary caution. See pages 35-38 of the group analysis slides in the AFNI workshop for some coverage:

[afni.nimh.nih.gov]

> I am also interested in adding gender as a categorical covariate.

Treat gender as a categorical factor (not covariate -- quantitative variable -- in the traditional sense).

> If I were to do that, would I just add it using a "+" in the -model, or do the
> covariates need to be continuous? (i.e., -model "taste*status+age+gender" )

You're using the word "covariate" in the sense that it's an explanatory variable of no interest. From modeling perspective, it does not matter from the human viewpoint: an explanatory variable in a model accounts for some data variability regardless how you call it.

You can model it as "taste*status+age+gender" if you don't believe there are any interactions between gender and taste/status.

Gang
Subject Author Posted

3dLME questions

Erin April 17, 2013 06:53PM

Re: 3dLME questions

gang April 18, 2013 10:44AM

Re: 3dLME questions

Erin April 18, 2013 11:56AM

Re: 3dLME questions

gang April 18, 2013 07:31PM

Re: 3dLME questions

Erin April 29, 2013 02:59PM

Re: 3dLME questions

Erin April 29, 2013 04:22PM

Re: 3dLME questions

gang April 29, 2013 04:30PM

Re: 3dLME questions

Erin May 18, 2013 04:27PM

Re: 3dLME questions

gang May 20, 2013 11:10AM

Re: 3dLME questions

Oya T June 19, 2013 06:19PM

Re: 3dLME questions

gang June 20, 2013 08:37AM