AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Anonymous User
July 07, 2013 01:00PM
Hi, All,

I'm hoping you can help debug a 3dANOVA3 script. The entire script will run just fine and output separate BRIK and HEAD files for each statistical contrast. However, when I include the -bucket command at the end, it crashes with no error message at all. Here's a truncated version of a fairly long script. I've done the usual things like check for trailing spaces at the end of lines--I'm sure this is a typo somewhere, but I also don't get a single error message which would help me tell where the problem is.

3dANOVA3 -type 5 \
-alevels 2 -blevels 3 -clevels 15 \
-dset 1 1 1 /Volumes/TessBackupFromBrown/MagNus/01S/01S.preproc/'stats.01S+tlrc[1]' \
-dset 1 2 1 /Volumes/TessBackupFromBrown/MagNus/01S/01S.preproc/'stats.01S+tlrc[4]' \
-dset 1 3 1 /Volumes/TessBackupFromBrown/MagNus/01S/01S.preproc/'stats.01S+tlrc[7]' \
-dset 1 1 2 /Volumes/TessBackupFromBrown/MagNus/03S/03S.preproc/'stats.03S+tlrc[1]' \
-dset 1 2 2 /Volumes/TessBackupFromBrown/MagNus/03S/03S.preproc/'stats.03S+tlrc[4]' \
-dset 1 3 2 /Volumes/TessBackupFromBrown/MagNus/03S/03S.preproc/'stats.03S+tlrc[7]' \
-dset 1 1 3 /Volumes/TessBackupFromBrown/MagNus/05S/05S.preproc/'stats.05S+tlrc[1]' \
-dset 1 2 3 /Volumes/TessBackupFromBrown/MagNus/05S/05S.preproc/'stats.05S+tlrc[4]' \
-dset 1 3 3 /Volumes/TessBackupFromBrown/MagNus/05S/05S.preproc/'stats.05S+tlrc[7]' \
----
-dset 1 1 15 /Volumes/TessBackupFromBrown/MagNus/29S/29S.preproc/'stats.29S+tlrc[1]' \
-dset 1 2 15 /Volumes/TessBackupFromBrown/MagNus/29S/29S.preproc/'stats.29S+tlrc[4]' \
-dset 1 3 15 /Volumes/TessBackupFromBrown/MagNus/29S/29S.preproc/'stats.29S+tlrc[7]' \
-dset 2 1 1 /Volumes/TessBackupFromBrown/MagNus/02T/02T.preproc/'stats.02T+tlrc[1]' \
-dset 2 2 1 /Volumes/TessBackupFromBrown/MagNus/02T/02T.preproc/'stats.02T+tlrc[4]' \
-dset 2 3 1 /Volumes/TessBackupFromBrown/MagNus/02T/02T.preproc/'stats.02T+tlrc[7]' \
-dset 2 1 2 /Volumes/TessBackupFromBrown/MagNus/04T/04T.preproc/'stats.04T+tlrc[1]' \
-dset 2 2 2 /Volumes/TessBackupFromBrown/MagNus/04T/04T.preproc/'stats.04T+tlrc[4]' \
-dset 2 3 2 /Volumes/TessBackupFromBrown/MagNus/04T/04T.preproc/'stats.04T+tlrc[7]' \
-dset 2 1 3 /Volumes/TessBackupFromBrown/MagNus/06T/06T.preproc/'stats.06T+tlrc[1]' \
-dset 2 2 3 /Volumes/TessBackupFromBrown/MagNus/06T/06T.preproc/'stats.06T+tlrc[4]' \
-dset 2 3 3 /Volumes/TessBackupFromBrown/MagNus/06T/06T.preproc/'stats.06T+tlrc[7]' \
------
-dset 2 1 15 /Volumes/TessBackupFromBrown/MagNus/30T/30T.preproc/'stats.30T+tlrc[1]' \
-dset 2 2 15 /Volumes/TessBackupFromBrown/MagNus/30T/30T.preproc/'stats.30T+tlrc[4]' \
-dset 2 3 15 /Volumes/TessBackupFromBrown/MagNus/30T/30T.preproc/'stats.30T+tlrc[7]' \
-amean 1 OneTalkerGroup \
-amean 2 TwoTalkerGroup \
-bmean 1 OneTalker \
-bmean 2 TwoTalker \
-bmean 3 Rest \
-adiff 2 1 TwoTalkerGroup-OneTalkerGroup \
-bdiff 2 1 TwoTalkerListen-OneTalkerListen \
-bdiff 2 3 TwoTalkerListen-Rest \
-bdiff 1 3 OneTalkerListen-Rest \
-fab Interaction \
-Abdiff 1 : 2 1 OneTalkerGroup_TwoTalker-OneTalker \
-Abdiff 2 : 2 1 TwoTalkerGroup_TwoTalker-OneTalker \
-Abdiff 1 : 1 3 OneTalkerGroup_OneTalkerListen-Rest \
-Abdiff 1 : 2 3 OneTalkerGroup_TwoTalkerListen-Rest \
-Abdiff 2 : 1 3 TwoTalkerGroup_OneTalkerListen-Rest \
-Abdiff 2 : 2 3 TwoTalkerGroup_TwoTalkerListnen-Rest \
-bucket TEST_ANOVA


Best,
Emily
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Subject Author Posted

3dANOVA3 -bucket not working

Anonymous User July 07, 2013 01:00PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 07, 2013 10:08PM

Re: 3dANOVA3 -bucket not working

Peter Molfese July 10, 2013 11:06AM

Re: 3dANOVA3 -bucket not working

Anonymous User July 10, 2013 12:30PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 10, 2013 02:33PM

Re: 3dANOVA3 -bucket not working

Peter Molfese July 10, 2013 02:49PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 10, 2013 03:24PM