AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 10, 2013 11:06AM
I'm seeing a similar behavior with the July 2, 2013 binaries. 3dANOVA3 runs and the 3dbucket command generates a final output image containing all of the contrasts, but it looks like 3dANOVA3 isn't deleting the temporary files associated with each main effect, interaction, or contrast. I tried running on an older version of AFNI (Apr 23, 2013), and found that 3dANOVA3 correctly removes the temporary files in the older version.

afni -version
Version AFNI_2011_12_21_1014
[[Precompiled binary macosx_10.7_Intel_64: Jul  2 2013]]


Script:
3dANOVA3 -type 4                                                              \
    -alevels 2                                                                \
    -blevels 3                                                                \
    -clevels 44                                                               \
    -dset  1  1  1 "tb5688.nii.gz[uns1#0_Coef]"                               \
    -dset  1  2  1 "tb5688.nii.gz[uns2#0_Coef]"                               \
    -dset  1  3  1 "tb5688.nii.gz[uns3#0_Coef]"                               \
    -dset  2  1  1 "tb5688.nii.gz[str1#0_Coef]"                               \
    -dset  2  2  1 "tb5688.nii.gz[str2#0_Coef]"                               \
    -dset  2  3  1 "tb5688.nii.gz[str3#0_Coef]"                               \
...
    -dset  1  1 44 "tb7066.nii.gz[uns1#0_Coef]"                               \
    -dset  1  2 44 "tb7066.nii.gz[uns2#0_Coef]"                               \
    -dset  1  3 44 "tb7066.nii.gz[uns3#0_Coef]"                               \
    -dset  2  1 44 "tb7066.nii.gz[str1#0_Coef]"                               \
    -dset  2  2 44 "tb7066.nii.gz[str2#0_Coef]"                               \
    -dset  2  3 44 "tb7066.nii.gz[str3#0_Coef]"                               \
    -fa condition \
    -fb block \
    -fab conditionXblock \
    -acontr -1 1 str-uns \
    -amean 1 uns \
    -amean 2 str \
    -aBcontr -1 1 : 1 str-uns_BL1 \
    -aBcontr -1 1 : 2 str-uns_BL2 \
    -aBcontr -1 1 : 3 str-uns_BL3 \
    -Abcontr 1 : -1 1 0 BL2-BL1_uns \
    -Abcontr 1 : 0 -1 1 BL3-BL2_uns \
    -Abcontr 1 : -1 0 1 BL3-BL1_uns \
    -Abcontr 2 : -1 1 0 BL2-BL1_str \
    -Abcontr 2 : 0 -1 1 BL3-BL2_str \
    -Abcontr 2 : -1 0 1 BL3-BL1_str  \
    -bucket ./exp_anova


Output:
++ 3dANOVA3: AFNI version=AFNI_2011_12_21_1014 (Jul  2 2013) [64-bit]
++ Authored by: B. Douglas Ward
Data set dimensions:  nx = 80  ny = 95  nz = 75  nxyz = 570000 
Number of input datasets = 264 

** Changes have been made for 3dANOVA3 computations of types 4 and 5.
   For details, please see:
   [afni.nimh.nih.gov]

++ Writing combined dataset into ./condition+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./block+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./conditionXblock+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./uns+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./str+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./str-uns+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./str-uns_BL1+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./str-uns_BL2+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./str-uns_BL3+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL2-BL1_uns+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL3-BL2_uns+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL3-BL1_uns+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL2-BL1_str+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL3-BL2_str+tlrc.HEAD
 + created 1 FDR curves in header
++ Writing combined dataset into ./BL3-BL1_str+tlrc.HEAD
 + created 1 FDR curves in header
Writing `bucket' dataset into ./exp_anova
RUNNING COMMAND: 3dbucket -prefix ./exp_anova ./condition+tlrc.BRIK ./block+tlrc.BRIK ./conditionXblock+tlrc.BRIK ./uns+tlrc.BRIK ./str+tlrc.BRIK ./str-uns+tlrc.BRIK ./str-uns_BL1+tlrc.BRIK ./str-uns_BL2+tlrc.BRIK ./str-uns_BL3+tlrc.BRIK ./BL2-BL1_uns+tlrc.BRIK ./BL3-BL2_uns+tlrc.BRIK ./BL3-BL1_uns+tlrc.BRIK ./BL2-BL1_str+tlrc.BRIK ./BL3-BL2_str+tlrc.BRIK ./BL3-BL1_str+tlrc.BRIK
++ 3dbucket: AFNI version=AFNI_2011_12_21_1014 (Jul  2 2013) [64-bit]
RUNNING COMMAND: 3drefit -addFDR  -sublabel 0 condition:Inten  -sublabel 1 condition:F-stat  -sublabel 2 block:Inten  -sublabel 3 block:F-stat  -sublabel 4 conditionXblock:Inten  -sublabel 5 conditionXblock:F-stat  -sublabel 6 uns:Mean  -sublabel 7 uns:t-stat  -sublabel 8 str:Mean  -sublabel 9 str:t-stat  -sublabel 10 str-uns:Contr  -sublabel 11 str-uns:t-stat  -sublabel 12 str-uns_BL1:Contr  -sublabel 13 str-uns_BL1:t-stat  -sublabel 14 str-uns_BL2:Contr  -sublabel 15 str-uns_BL2:t-stat  -sublabel 16 str-uns_BL3:Contr  -sublabel 17 str-uns_BL3:t-stat  -sublabel 18 BL2-BL1_uns:Contr  -sublabel 19 BL2-BL1_uns:t-stat  -sublabel 20 BL3-BL2_uns:Contr  -sublabel 21 BL3-BL2_uns:t-stat  -sublabel 22 BL3-BL1_uns:Contr  -sublabel 23 BL3-BL1_uns:t-stat  -sublabel 24 BL2-BL1_str:Contr  -sublabel 25 BL2-BL1_str:t-stat  -sublabel 26 BL3-BL2_str:Contr  -sublabel 27 BL3-BL2_str:t-stat  -sublabel 28 BL3-BL1_str:Contr  -sublabel 29 BL3-BL1_str:t-stat  ./exp_anova+tlrc.BRIK
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Jul  2 2013) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./exp_anova+tlrc.BRIK
 + created 15 FDR curves in dataset header
++ 3drefit processed 1 datasets
Subject Author Posted

3dANOVA3 -bucket not working

Anonymous User July 07, 2013 01:00PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 07, 2013 10:08PM

Re: 3dANOVA3 -bucket not working

Peter Molfese July 10, 2013 11:06AM

Re: 3dANOVA3 -bucket not working

Anonymous User July 10, 2013 12:30PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 10, 2013 02:33PM

Re: 3dANOVA3 -bucket not working

Peter Molfese July 10, 2013 02:49PM

Re: 3dANOVA3 -bucket not working

rick reynolds July 10, 2013 03:24PM