Hi Peter,
Thanks for the note - so I need to add some lines at the bottom of my 3dttest++ command
(see below), right? According to the help file, it should be something like
3dClustSim -both -NN 123 -mask mask_group+tlrc \
-fwhmxyz ??? -prefix ClustSim
3drefit -atrstring AFNI_CLUSTSIM_MASK file:ClustSim.mask \
-atrstring AFNI_CLUSTSIM_NN1 file:ClustSim.NN1.niml \
-atrstring AFNI_CLUSTSIM_NN2 file:ClustSim.NN2.niml \
-atrstring AFNI_CLUSTSIM_NN3 file:ClustSim.NN3.niml \
group_semantic+tlrc
I am not sure what to put for -fwhmxyz ??? can you please help?
As you can see, I am using the -mask option in my 3dttest++ command.
(I took the mask_group+tlrc file from one of the individual analyses, hope that's correct)
3dttest++ -prefix group_semantic+tlrc \
-mask mask_group+tlrc \
-toz \
-setA \
'stats.camerona+tlrc[1]' \
'stats.cameronr+tlrc[1]' \
'stats.mooreb+tlrc[1]' \
'stats.moores+tlrc[1]' \
-setB \
'stats.preglera+tlrc[1]' \
'stats.schwartzel+tlrc[1]' \
'stats.solisc+tlrc[1]'