AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 10, 2013 11:42PM
Hi Rick,

I have updated my afni binaries and the output of the afni -ver command is now

Version AFNI_2011_12_21_1014
[[Precompiled binary macosx_10.6_Intel_64: Aug 6 2013]]

but I am getting still the same error when I try to run uber_ttest.py or any other of the uber_*.py scripts

Fatal Python error: Interpreter not initialized (version mismatch?)

In addition, a Mac error (window opens) is also generated, saying

Python quit unexpectedly while using the libpython2.7.dylib plug-in

Then when looking at the detailed report, these are the initial lines:


Process: Python [76014]
Path: /System/Library/Frameworks/Python.framework/Versions/2.6/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: tcsh [26540]

PlugIn Path: /sw/lib/python2.7/config/libpython2.7.dylib
PlugIn Identifier: libpython2.7.dylib
PlugIn Version: 2.7.0 (compatibility 2.7.0)

Date/Time: 2013-08-10 23:27:37.098 -0400
OS Version: Mac OS X 10.6.8 (10K549)
Report Version: 6

Interval Since Last Report: 31868099 sec
Crashes Since Last Report: 141
Per-App Crashes Since Last Report: 19
Anonymous UUID: E8B2DBA5-A3DC-403D-A650-6A7DA86F0959

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Application Specific Information:
abort() called

Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 libSystem.B.dylib 0x00007fff8006d0b6 __kill + 10
1 libSystem.B.dylib 0x00007fff8010d9f6 abort + 83
2 libpython2.7.dylib 0x00000001019d9181 Py_FatalError + 49
3 libpython2.7.dylib 0x00000001019d466c Py_InitModule4_64 + 396
4 QtGui.so 0x0000000101011081 initQtGui + 49
5 org.python.python 0x000000010009bd3b _PyImport_LoadDynamicModule + 189
6 org.python.python 0x000000010009aaf8 PyImport_ReloadModule + 1347
7 org.python.python 0x000000010009ae09 PyImport_ReloadModule + 2132
8 org.python.python 0x000000010009b698 PyImport_ImportModuleLevel + 1519
9 org.python.python 0x00000001000839cb _PyBuiltin_Init + 14264
10 org.python.python 0x000000010000aff3 PyObject_Call + 112
11 org.python.python 0x00000001000849db PyEval_CallObjectWithKeywords + 175
12 org.python.python 0x00000001000885ea PyEval_EvalFrameEx + 12344
13 org.python.python 0x00000001000892e1 PyEval_EvalFrameEx + 15663
14 org.python.python 0x00000001000892e1 PyEval_EvalFrameEx + 15663
15 org.python.python 0x000000010008acce PyEval_EvalCodeEx + 1803
16 org.python.python 0x000000010008ad61 PyEval_EvalCode + 54
17 org.python.python 0x00000001000a265a Py_CompileString + 78
18 org.python.python 0x00000001000a2723 PyRun_FileExFlags + 150
19 org.python.python 0x00000001000a423d PyRun_SimpleFileExFlags + 704
20 org.python.python 0x00000001000b0286 Py_Main + 2718
21 org.python.python.app 0x0000000100000e6c start + 52

Any idea what the problem might be? At this point, all my programs are updated.

Many thanks

Otto
Subject Author Posted

Otto: viewing 3dttest++ results

otto August 02, 2013 08:21PM

Re: Otto: viewing 3dttest++ results

Peter Molfese August 02, 2013 10:31PM

Otto: need to add 3dClustSim & 3drefit?

otto August 03, 2013 05:07PM

Re: Otto: need to add 3dClustSim & 3drefit?

Peter Molfese August 03, 2013 06:15PM

Otto: manual for uber_ttest.py?

otto August 05, 2013 08:10PM

Re: Otto: manual for uber_ttest.py?

rick reynolds August 05, 2013 08:43PM

Otto: uber_ttest.py: interpreter error

otto August 07, 2013 05:02PM

Re: Otto: uber_ttest.py: interpreter error

rick reynolds August 07, 2013 09:46PM

Otto: python version 2.7 used

otto August 08, 2013 09:26PM

Re: Otto: python version 2.7 used

rick reynolds August 09, 2013 08:18AM

Otto: python error: interpreter not initailized

otto August 10, 2013 11:42PM

Re: Otto: python error: interpreter not initailized

rick reynolds August 12, 2013 09:17AM

Otto: python2.7 path set wrong?

otto August 14, 2013 02:04PM

Re: Otto: python2.7 path set wrong?

rick reynolds August 14, 2013 03:53PM

Otto: uber_ttest works now

otto August 16, 2013 06:34PM