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Dear AFNI users-

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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pshuk
September 27, 2013 01:55PM
Hi,
I am doing a test run with 3dMVM and getting this strange error. Here is my error:

R: Command not found.
----------------------------
here is my script. Kindly help.
---------------------------------
set grp1 = CON_1
set grp2 = PDL_1
set data1 = /mnt/Processing1/Priyank/RESULTS_motion1/$grp1
set data2 = /mnt/Processing1/Priyank/RESULTS_motion1/$grp2

3dMVM -prefix test -jobs 2 \
-model "Group" \
-num_glt 5 \
-gltLabel 1 CON_1_Mean -gltcode 1 'Group : 1*CON_1' \
-gltLabel 2 PSP_1_Mean -gltcode 2 'Group : 1*PSP_1' \
-gltLabel 3 CON-PSP_inter -gltcode 3 'Group : 1*CON_1 -1*PDL_1' \
-gltLabel 4 CON_PSP_same_vis -gltcode 4 'task : 1*same_vis : 1*CON_1 -1*PDL_1' \
-gltLabel 5 CON_PSP_same_nv -gltcode 5 'task : 1*same_nv : 1*CON_1 -1*PDL_1' \
-dataTable \
Subj Group task InputFile \
CON_001_1 CON_1 same_vis $data1/CON_001_1/stats.blur4.CON_001_1+tlrc'[same_vis#0_Coef]' \
CON_002_1 CON_1 same_vis $data1/CON_002_1/stats.blur4.CON_002_1+tlrc'[same_vis#0_Coef]' \
CON_003_1 CON_1 same_vis $data1/CON_003_1/stats.blur4.CON_003_1+tlrc'[same_vis#0_Coef]' \
CON_004_1 CON_1 same_vis $data1/CON_004_1/stats.blur4.CON_004_1+tlrc'[same_vis#0_Coef]' \
CON_001_1 CON_1 same_nv $data1/CON_001_1/stats.blur4.CON_001_1+tlrc'[same_nv#0_Coef]' \
CON_002_1 CON_1 same_nv $data1/CON_002_1/stats.blur4.CON_002_1+tlrc'[same_nv#0_Coef]' \
CON_003_1 CON_1 same_nv $data1/CON_003_1/stats.blur4.CON_003_1+tlrc'[same_nv#0_Coef]' \
CON_004_1 CON_1 same_nv $data1/CON_004_1/stats.blur4.CON_004_1+tlrc'[same_nv#0_Coef]' \
PDL_001_1 PDL_1 same_vis $data2/PDL_001_1/stats.blur4.PDL_001_1+tlrc'[same_vis#0_Coef]' \
PDL_002_1 PDL_1 same_vis $data2/PDL_002_1/stats.blur4.PDL_002_1+tlrc'[same_vis#0_Coef]' \
PDL_003_1 PDL_1 same_vis $data2/PDL_003_1/stats.blur4.PDL_003_1+tlrc'[same_vis#0_Coef]' \
PDL_004_1 PDL_1 same_vis $data2/PDL_004_1/stats.blur4.PDL_004_1+tlrc'[same_vis#0_Coef]' \
PDL_001_1 PDL_1 same_nv $data2/PDL_001_1/stats.blur4.PDL_001_1+tlrc'[same_nv#0_Coef]' \
PDL_002_1 PDL_1 same_nv $data2/PDL_002_1/stats.blur4.PDL_002_1+tlrc'[same_nv#0_Coef]' \
PDL_003_1 PDL_1 same_nv $data2/PDL_003_1/stats.blur4.PDL_003_1+tlrc'[same_nv#0_Coef]' \
PDL_004_1 PDL_1 same_nv $data2/PDL_004_1/stats.blur4.PDL_004_1+tlrc'[same_nv#0_Coef]'



Edited 1 time(s). Last edit at 09/27/2013 04:31PM by pshuk.
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Subject Author Posted

3dMVM R command not found

pshuk September 27, 2013 01:55PM

Re: 3dMVM R command not found

Peter Molfese September 27, 2013 03:07PM

Re: 3dMVM R command not found

pshuk September 27, 2013 03:44PM

Re: 3dMVM R command not found

Peter Molfese September 27, 2013 05:07PM

Re: 3dMVM R command not found

gang September 27, 2013 05:17PM

Re: 3dMVM R command not found

Isaac Schwabacher September 27, 2013 05:44PM

Re: 3dMVM R command not found

pshuk September 30, 2013 10:52AM

Re: 3dMVM R command not found

Peter Molfese September 30, 2013 11:06AM

Re: 3dMVM R command not found

gang September 30, 2013 11:25AM