AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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pshuk
September 30, 2013 10:52AM
I corrected gltcode to gltCode and few other errors but still getting the error message:

Error:
Incorrect variable name in GLT coding: 1*same_vis

here is the code
----------------------------------------------
#!/bin/tcsh

set grp1 = CON_1
set grp2 = PDL_1
set data1 = /mnt/Processing1/Priyank/RESULTS_motion1/$grp1
set data2 = /mnt/Processing1/Priyank/RESULTS_motion1/$grp2

3dMVM -prefix test -jobs 2 \
-model Group \
-num_glt 5 \
-gltLabel 1 CON_1_Mean -gltCode 1 'Group : 1*CON_1' \
-gltLabel 2 PDL_1_Mean -gltCode 2 'Group : 1*PDL_1' \
-gltLabel 3 CON-PDL_inter -gltCode 3 'Group : 1*CON_1 -1*PDL_1' \
-gltLabel 4 CON_PDL_same_vis -gltCode 4 'task : 1*same_vis : 1*CON_1 -1*PDL_1' \
-gltLabel 5 CON_PDL_same_nv -gltCode 5 'task : 1*same_nv : 1*CON_1 -1*PDL_1' \
-dataTable \
Subj Group task InputFile \
CON_001_1 CON_1 same_vis $data1/CON_001_1/stats.blur4.CON_001_1+tlrc'[same_vis#0_Coef]' \
CON_002_1 CON_1 same_vis $data1/CON_002_1/stats.blur4.CON_002_1+tlrc'[same_vis#0_Coef]' \
CON_003_1 CON_1 same_vis $data1/CON_003_1/stats.blur4.CON_003_1+tlrc'[same_vis#0_Coef]' \
CON_004_1 CON_1 same_vis $data1/CON_004_1/stats.blur4.CON_004_1+tlrc'[same_vis#0_Coef]' \
CON_001_1 CON_1 same_nv $data1/CON_001_1/stats.blur4.CON_001_1+tlrc'[same_nv#0_Coef]' \
CON_002_1 CON_1 same_nv $data1/CON_002_1/stats.blur4.CON_002_1+tlrc'[same_nv#0_Coef]' \
CON_003_1 CON_1 same_nv $data1/CON_003_1/stats.blur4.CON_003_1+tlrc'[same_nv#0_Coef]' \
CON_004_1 CON_1 same_nv $data1/CON_004_1/stats.blur4.CON_004_1+tlrc'[same_nv#0_Coef]' \
PDL_001_1 PDL_1 same_vis $data2/PDL_001_1/stats.blur4.PDL_001_1+tlrc'[same_vis#0_Coef]' \
PDL_002_1 PDL_1 same_vis $data2/PDL_002_1/stats.blur4.PDL_002_1+tlrc'[same_vis#0_Coef]' \
PDL_003_1 PDL_1 same_vis $data2/PDL_003_1/stats.blur4.PDL_003_1+tlrc'[same_vis#0_Coef]' \
PDL_004_1 PDL_1 same_vis $data2/PDL_004_1/stats.blur4.PDL_004_1+tlrc'[same_vis#0_Coef]' \
PDL_001_1 PDL_1 same_nv $data2/PDL_001_1/stats.blur4.PDL_001_1+tlrc'[same_nv#0_Coef]' \
PDL_002_1 PDL_1 same_nv $data2/PDL_002_1/stats.blur4.PDL_002_1+tlrc'[same_nv#0_Coef]' \
PDL_003_1 PDL_1 same_nv $data2/PDL_003_1/stats.blur4.PDL_003_1+tlrc'[same_nv#0_Coef]' \
PDL_004_1 PDL_1 same_nv $data2/PDL_004_1/stats.blur4.PDL_004_1+tlrc'[same_nv#0_Coef]'
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Subject Author Posted

3dMVM R command not found

pshuk September 27, 2013 01:55PM

Re: 3dMVM R command not found

Peter Molfese September 27, 2013 03:07PM

Re: 3dMVM R command not found

pshuk September 27, 2013 03:44PM

Re: 3dMVM R command not found

Peter Molfese September 27, 2013 05:07PM

Re: 3dMVM R command not found

gang September 27, 2013 05:17PM

Re: 3dMVM R command not found

Isaac Schwabacher September 27, 2013 05:44PM

Re: 3dMVM R command not found

pshuk September 30, 2013 10:52AM

Re: 3dMVM R command not found

Peter Molfese September 30, 2013 11:06AM

Re: 3dMVM R command not found

gang September 30, 2013 11:25AM