AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 03, 2013 12:46AM
You should be able to use 3dNwarpApply to apply the nonlinear warp acquired via auto_warp.py to your GM volume. Because auto_warp.py runs both an affine and a nonlinear, it may be necessary to concatenate the two transforms, which you can do within the same command.

Your command to warp the GM mask would go something like this:

3dNwarpApply -master anat_ns+tlrc -dxyz 3 \
-source GM+orig \
-nwarp 'anat.un.aff.qw_WARP.nii anat.Xaff12.1D' \
-prefix MNI.GM
Subject Author Posted

@auto_tlrc

Emily November 20, 2013 05:54PM

Re: @auto_tlrc

nick November 20, 2013 09:09PM

Re: @auto_tlrc

Emily November 22, 2013 04:01PM

Re: @auto_tlrc

nick November 22, 2013 04:04PM

Re: @auto_tlrc

Emily November 22, 2013 05:16PM

Re: @auto_tlrc

Daniel Glen November 22, 2013 05:19PM

Re: @auto_tlrc

Peter Molfese November 22, 2013 05:27PM

Re: @auto_tlrc

Emily November 22, 2013 05:32PM

Re: @auto_tlrc

Peter Molfese November 22, 2013 06:01PM

Re: @auto_tlrc

Emily November 22, 2013 08:54PM

Re: @auto_tlrc

Emily November 22, 2013 08:26PM

Re: @auto_tlrc

Emily November 22, 2013 05:27PM

Re: @auto_tlrc

Daniel Glen November 22, 2013 11:00PM

Re: @auto_tlrc

Emily November 24, 2013 08:06PM

Re: @auto_tlrc

Daniel Glen November 26, 2013 12:00PM

Re: @auto_tlrc

Emily November 26, 2013 05:32PM

Re: @auto_tlrc

Daniel Glen November 26, 2013 07:42PM

Re: @auto_tlrc

Emily December 02, 2013 05:58PM

Re: @auto_tlrc

Peter Molfese December 03, 2013 12:46AM