AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 06, 2014 09:41AM
The covariate file should be similar to the 3dttest++ covariate file. From the help:

 -covariates cf = Read file 'cf' that contains covariates values for each dataset
                  input (in both -setA and -setB; there can only at most one
                  -covariates option).  Format of the file
     FIRST LINE  -->  subject IQ   age
     LATER LINES -->  Elvis   143   42
                      Fred     85   59
                      Ethel   109   49
                      Lucy    133   32
        This file format should be compatible with 3dMEMA.

        ++ The first column contains the labels that must match the dataset
            labels stored in the input *.grpincorr.niml files, which are
            either the dataset prefixes or whatever you supplied in the
            3dSetupGroupInCorr program via '-labels'.
            -- If you ran 3dSetupGroupInCorr before this update, its output
               .grpincorr.niml file will NOT have dataset labels included.
               Such a file cannot be used with -covariates -- Sorry.

        ++ The later columns contain numbers: the covariate values for each
            input dataset.
            -- 3dGroupInCorr does not allow voxel-level covariates.  If you
               need these, you will have to use 3dttest++ on the '-sendall'
               output (of individual dataset correlations), which might best
               be done using '-batch' mode (cf. far below).

        ++ The first line contains column headers.  The header label for the
            first column isn't used for anything.  The later header labels are
            used in the sub-brick labels sent to AFNI.
Subject Author Posted

3dGroupInCorr and covariates

cfrum January 06, 2014 09:19AM

Re: 3dGroupInCorr and covariates

Peter Molfese January 06, 2014 09:41AM

Re: 3dGroupInCorr and covariates

cfrum January 06, 2014 03:21PM

Re: 3dGroupInCorr and covariates

gang January 06, 2014 03:32PM

Re: 3dGroupInCorr and covariates

Peter Molfese January 06, 2014 04:00PM

Re: 3dGroupInCorr and covariates

cfrum January 07, 2014 09:02AM